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PPD_00JMQCT.1

Democratic_Republic_of_the_Congo/PPD_00JMQCT.1/2012-09-09
C. E. Hulseberg, R. Kumar, P. Larson, N. Di Paola, J. Richardson, J. Hanson, N. Wauquier, J. N. Fair, M. Makuwa, P. Mulembakani, J.-J. M. Tamfun, R. J. Schoepp, M. Sanchez-Lockhart, G. F. Palacios, J. H. Kuhn & J. R. Kugelman

United States Army Research Institute of Infectious Diseases, Genome Sciences

Sample details

Collection date
2012-09-09
Sampling location
Democratic Republic of the Congo (Isiro)
Isolate name
Bundibugyo virus/H.sapiens-wt/COD/2012/Isiro-201200120-1

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-19 12:16insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2020-08-18
NCBI update date
2020-09-18

Host

Host

Submission details

Submission ID
MT742157.1
Submitting group
Date submitted
2026-05-19 12:16:35 UTC
Date released
2026-05-19 12:17:15 UTC
Earliest release date
2020-08-18

Alignment and QC

Length
18342 (96.8%)
# of SNPs
238
# of unknown bases
1
# of stop codons
1
Stop Codons
GP_003:367

Nucleotide mutations

Mutations called relative to the NC_014373.1 reference

Substitutions

  • C213T
  • A266G
  • C439T
  • C530T
  • T643C
  • C646T
  • C1018T
  • A1108G
  • G1288A
  • T1345C
  • T1375C
  • T1453A
  • C1675T
  • T1696C
  • T1861C
  • A1954G
  • A2007G
  • G2027A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_014373.1 reference

Substitutions

GP

  • GP:Y151F
  • GP:E188K
  • GP:F310L
  • GP:E345K
  • GP:P365S
  • GP:P367L
  • GP:D368N
  • GP:P389L
  • GP:R394G
  • GP:H452Q
  • GP:T458I
  • GP:P481L
  • GP:T486I
  • GP:A489V

GP_003

  • GP_003:Y151F
  • GP_003:E188K
  • GP_003:Q367*

L

  • L:Y116H
  • L:V395I
  • L:V402I
  • L:K1155R
  • L:S1323A
  • L:I1562V
  • L:K1570R
  • L:I1578V
  • L:L1595Q
  • L:D1614G
  • L:I1664R
  • L:D1667N
  • L:R1704I
  • L:Q1715K
  • L:S1716P
  • L:I1720T
  • L:D1772G
  • L:A1778V

NP

  • NP:Q517R
  • NP:G524S
  • NP:V531A
  • NP:D546S
  • NP:S559P
  • NP:S622L

VP24

  • VP24:S24N

VP30

  • VP30:S61F

VP35

  • VP35:G187E
  • VP35:M192I

VP40

  • VP40:I14M
  • VP40:S26N
  • VP40:N28S
  • VP40:A31S
Deletions
N/A
Insertions
N/A

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