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PPD_00JMGJN.1

DENV-1/Comoros/DENV1-85638-3/2026-01-31
T. Fourie, R. Klitting, L. Pezzi, L. Bosio, G. Priorkowski, G. Grard, G. Durand, X. de Lamballerie, N. Traversier, M.-C. Jaffar, A. Nazli, M. Peden, M. Geulen, T. Canivez, G. Piorkowski & R. Amaral

CNR Arbovirus, CNR Arbovirus

Sample details

Collection date
2026-01-31
Sampling location
Comoros
Isolate name
DENV1-85638-3

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-17 08:02insdc_ingest_userOPEN
Data use terms URL

Lineage & Serotype

Lineage
1III_A.2
Serotype
DENV-1

INSDC

INSDC accession
NCBI release date
2026-05-16
NCBI update date
2026-05-16

Host

Host

Submission details

Submission ID
PZ385158.1
Submitting group
Date submitted
2026-05-17 08:02:21 UTC
Date released
2026-05-17 08:02:37 UTC
Earliest release date
2026-05-16

Alignment and QC

Length
10562 (63.9%)
# of SNPs
566
# of deleted bases
18
# of unknown bases
3721

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • G37A
  • A112G
  • T171G
  • T208C
  • T230A
  • T244C
  • T274C
  • G302A
  • C328T
  • G340A
  • G349A
  • A355G
  • A363G
  • T368C
  • G388A
  • T397C
  • C412T
  • T442C
Deletions

10296-10302, 10308-10318
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001477.1 reference

Substitutions

C

  • C:V26G
  • C:L46M
  • C:G70S
  • C:N90S

E

  • E:D37N
  • E:T88A
  • E:I114L
  • E:T161I
  • E:K203E
  • E:I293T
  • E:M297V
  • E:V322M
  • E:V428M
  • E:I436V
  • E:I439V

NS1

  • NS1:V89I
  • NS1:V93A
  • NS1:S94N
  • NS1:A98T
  • NS1:V128T
  • NS1:N139D
  • NS1:N146D
  • NS1:I162V
  • NS1:V178M
  • NS1:T307I
  • NS1:K324R
  • NS1:K347R

NS2A

  • NS2A:I15V
  • NS2A:G35A
  • NS2A:L41F
  • NS2A:T44I
  • NS2A:A64V
  • NS2A:K67R
  • NS2A:R82K
  • NS2A:V106I
  • NS2A:A147T
  • NS2A:V155I
  • NS2A:F159L
  • NS2A:H162D
  • NS2A:I171V
  • NS2A:I174V
  • NS2A:L199F

NS2B

  • NS2B:V11I

NS3

  • NS3:A91T
  • NS3:A112T
  • NS3:R185K
  • NS3:V221I

NS4A

  • NS4A:R76K
  • NS4A:I89M
  • NS4A:A93V

NS4B

  • NS4B:A18V
  • NS4B:A19V
  • NS4B:A27T
  • NS4B:V31I

NS5

  • NS5:V270I
  • NS5:E559Q
  • NS5:N585S
  • NS5:A616V
  • NS5:T635N
  • NS5:P636S
  • NS5:V642A
  • NS5:K647E
  • NS5:T651V
  • NS5:I669T
  • NS5:F881Y

prM

  • prM:S15T
Deletions
N/A
Insertions
N/A

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