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PPD_00JMGC1.1

DENV-2/Comoros/DENV2-81091-3/2025-04-16
T. Fourie, R. Klitting, L. Pezzi, L. Bosio, G. Priorkowski, G. Grard, G. Durand, X. de Lamballerie, N. Traversier, M.-C. Jaffar, A. Nazli, M. Peden, M. Geulen, T. Canivez, G. Piorkowski & R. Amaral

CNR Arbovirus, CNR Arbovirus

Sample details

Collection date
2025-04-16
Sampling location
Comoros
Isolate name
DENV2-81091-3

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-17 08:02insdc_ingest_userOPEN
Data use terms URL

Lineage & Serotype

Lineage
2II_A.2.2
Serotype
DENV-2

INSDC

INSDC accession
NCBI release date
2026-05-16
NCBI update date
2026-05-16

Host

Host

Submission details

Submission ID
PZ385152.1
Submitting group
Date submitted
2026-05-17 08:02:21 UTC
Date released
2026-05-17 08:02:37 UTC
Earliest release date
2026-05-16

Alignment and QC

Length
10672 (87.5%)
# of SNPs
720
# of deleted bases
2
# of unknown bases
1289

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • C54T
  • A122G
  • A219G
  • A228G
  • G252A
  • T292C
  • G297A
  • A309G
  • A318G
  • A324G
  • T330C
  • T336C
  • C348T
  • T397A
  • C401T
  • T414C
  • T423C
  • T431C
Deletions

10293, 10294
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001474.2 reference

Substitutions

C

  • C:K9R
  • C:S101T
  • C:A102V
  • C:V112A

E

  • E:M6I
  • E:E71A
  • E:R120T
  • E:V129I
  • E:H149N
  • E:I164V
  • E:I170V
  • E:E360G
  • E:N390S
  • E:I462V
  • E:T478S
  • E:I484V

NS1

  • NS1:V84A
  • NS1:S128L
  • NS1:T146A
  • NS1:K174R
  • NS1:N222S
  • NS1:L247F
  • NS1:I264T
  • NS1:T265A
  • NS1:D281E

NS2A

  • NS2A:V5I
  • NS2A:I33V
  • NS2A:V41M
  • NS2A:T63A
  • NS2A:R94K
  • NS2A:I116M
  • NS2A:I120M
  • NS2A:V133I
  • NS2A:K135R
  • NS2A:M136V
  • NS2A:R138K
  • NS2A:I152V
  • NS2A:V155A

NS3

  • NS3:I333M
  • NS3:V351I
  • NS3:V395I

NS4A

  • NS4A:D23N
  • NS4A:R76K
  • NS4A:I93T

NS4B

  • NS4B:L13F
  • NS4B:I18T
  • NS4B:V48I
  • NS4B:F112L

NS5

  • NS5:I5T
  • NS5:S15N
  • NS5:M70L
  • NS5:P154S
  • NS5:E169D
  • NS5:A196T
  • NS5:Y247H
  • NS5:I267V
  • NS5:I271T
  • NS5:H288Y
  • NS5:E289G
  • NS5:V335I
  • NS5:R430G
  • NS5:E616G
  • NS5:S631G
  • NS5:I637A
  • NS5:Q644R
  • NS5:N645D
  • NS5:I687V
  • NS5:A865T

prM

  • prM:G7N
  • prM:K16R
  • prM:R19K
  • prM:S28E
  • prM:A29D
  • prM:I37M
  • prM:M49I
  • prM:K52N
  • prM:R55L
  • prM:I56L
  • prM:T57R
  • prM:E58Q
  • prM:T59N
  • prM:D62E
  • prM:V64I
  • prM:A70S
  • prM:E72S
  • prM:S81T
Deletions
N/A
Insertions
N/A

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