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PPD_00JM5Y5.1
Download
Download FASTA
Download metadata TSV
China/PPD_00JM5Y5.1/2025-04-16
Y. Song
Jiaxing Center for Disease Control and Prevention, Jiaxing Key Laboratory of Pathogenic Microbiology
Sample details
Collection date
2025-04-16
Sampling location
China
Isolate name
HMPV/CNJX/2025/1617
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-14 09:30
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
B2
INSDC
INSDC accession
PZ317216.1
NCBI release date
2026-05-14
NCBI update date
2026-05-14
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ317216.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-14 09:30:55 UTC
Date released
2026-05-14 09:33:45 UTC
Earliest release date
2026-05-14
Alignment and QC
Length
13210 (99.6%)
# of SNPs
2485
# of inserted bases
14
# of deleted bases
107
# of frame shifts
1
# of stop codons
1
Frame shifts
G:207-224(nt:6865-6918)
Stop Codons
SH:178
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
G
63
A
T
70
C
A
72
G
C
78
T
G
81
A
G
105
A
G
126
A
T
129
C
A
132
C
C
150
T
A
162
G
A
168
G
G
177
T
T
183
C
A
189
G
G
195
T
T
198
C
G
199
A
Show more
Deletions
2947, 3006, 4684-4722, 6025-6027, 6109, 6110, 6196, 6210-6215, 6691-6693, 6864, 6919, 6920, 6975-6984, 7009-7015, 7035-7037, 7144-7147, 13188, 13208, 13209, 13283-13289, 13300-13313
Insertions
ins_2981:C, ins_5813:AGA, ins_6759:GCAACC, ins_7065:TT, ins_7080:T, ins_13229:G
Amino acid substitutions
Substitutions called relative to the
NC_039199.1
reference
Substitutions
F
F:
V
6
M
F:
F
9
I
F:
A
61
T
F:
R
82
K
F:
V
122
I
F:
T
135
N
F:
N
139
G
F:
K
143
T
F:
D
167
E
F:
R
175
S
F:
T
223
N
F:
N
233
Y
F:
F
258
I
F:
D
280
N
F:
V
286
I
F:
G
294
E
F:
K
296
D
F:
Q
312
K
Show more
G
G:
K
4
R
G:
T
10
A
G:
L
14
F
G:
R
17
K
G:
V
18
M
G:
V
22
I
G:
A
23
R
G:
R
24
S
G:
F
28
Y
G:
K
29
R
G:
A
31
T
G:
S
32
T
G:
V
34
I
G:
I
38
L
G:
T
40
A
G:
I
43
M
G:
Y
48
F
G:
N
52
D
Show more
L
L:
L
4
F
L:
N
5
C
L:
N
42
K
L:
I
50
V
L:
K
61
R
L:
N
65
M
L:
S
66
T
L:
I
75
V
L:
V
79
I
L:
V
89
T
L:
T
109
S
L:
N
113
S
L:
S
123
T
L:
D
127
N
L:
S
132
N
L:
S
141
V
L:
K
162
R
L:
V
182
I
Show more
M
M:
I
23
V
M:
E
103
D
M:
E
111
D
M:
T
156
I
M:
K
237
R
M:
T
241
S
M2-1
M2-1:
I
37
L
M2-1:
R
52
K
M2-1:
S
88
G
M2-1:
V
108
I
M2-1:
V
130
I
M2-1:
R
149
K
M2-1:
K
160
R
M2-1:
A
169
T
M2-1:
E
170
D
M2-2
M2-2:
E
18
K
M2-2:
V
22
K
M2-2:
V
28
A
M2-2:
D
37
E
M2-2:
A
41
T
M2-2:
N
55
S
N
N:
A
54
T
N:
A
57
T
N:
S
71
C
N:
R
96
K
N:
I
103
G
N:
D
110
E
N:
A
136
V
N:
M
201
V
N:
D
212
E
N:
H
220
Y
N:
K
356
R
N:
V
385
M
N:
S
389
N
N:
N
391
D
P
P:
L
19
I
P:
R
28
K
P:
K
29
R
P:
P
30
S
P:
S
35
T
P:
I
39
V
P:
N
44
T
P:
V
46
I
P:
R
57
K
P:
K
60
R
P:
P
61
S
P:
T
62
S
P:
I
63
T
P:
S
65
L
P:
T
72
A
P:
K
74
S
P:
G
75
S
P:
E
81
T
Show more
SH
SH:
I
2
K
SH:
T
17
N
SH:
H
18
Q
SH:
D
25
N
SH:
V
30
L
SH:
V
33
A
SH:
L
44
F
SH:
I
50
V
SH:
I
61
A
SH:
S
64
L
SH:
T
66
N
SH:
S
73
T
SH:
S
74
K
SH:
S
75
L
SH:
V
80
T
SH:
T
82
I
SH:
K
83
R
SH:
T
84
P
Show more
Deletions
G
G:225
SH
SH:175
Insertions
SH
ins_SH:108:R
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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