PPD_00JM1H5.1

Chile/PPD_00JM1H5.1/2024-07-30

A. Barrera, H. Ramos, E. Fuentes-Luppichini, C. Martinez-Valdebenito, J. Pradenas, C. Rogers, C. Palma, C. Campillo, M. Navarrete, N. L. Corre, J. Angulo, M. Ferres & N. Le Corre

Pontificia Universidad Catolica de Chile, Area de biomedicina

Sample details

Collection date

2024-07-30

Sampling location

Chile

Isolate name

CHI-Hu13724_P2

Data use terms

Changed	User	Data use terms
2026-05-09 18:05	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession L

PV808478.1

INSDC accession M

PV808477.1

INSDC accession S

PV808476.1

NCBI release date

2025-11-04

Host

human (Homo sapiens)

Is lab host

True

Submission details

Submission ID

PV808478.1.L/PV808477.1.M/PV808476.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-09 18:05:13 UTC

Date released

2026-05-09 18:06:54 UTC

Earliest release date

2025-11-04

Alignment and QC

Length L

6555 (99.9%)

# of SNPs L

388

Length M

3659 (99.7%)

# of SNPs M

198

Length S

1861 (99.1%)

# of SNPs S

119

# of inserted bases S

# of deleted bases S

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

T47C
C74T
C131T
C137T
C146T
C147T
G149A
C155T
C173T
T182C
A200G
T215C
A218G
A233C
A296G
T297C
A302G
T326C

M

T74C
G114A
C147T
C174T
C190T
A192G
C231T
C243T
A264G
C285T
C315T
G339A
T345C
A360G
A381G
T387C
A391G
C394T

S

G63A
G66A
G120A
A135G
G179A
T202C
A219G
T244C
T306C
A312G
G315A
A318G
T354C
T357C
T367C
G378A
C417T
C444A

Deletions

S

1443, 1573

Insertions

S

ins_1486:TTT, ins_1555:A, ins_1631:TTT, ins_1666:GT

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references