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PPD_00JM1AL.1

Argentina/PPD_00JM1AL.1/2022
R. Coelho, S. Kehl, N. Periolo, D. Alonso, C. Bellomo & V. Martinez

INEI ANLIS, Virology

Sample details

Collection date
2022
Sampling location
Argentina
Isolate name
Epuyen

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 18:05insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2024-09-25

Host

Host
Is lab host
True

Submission details

Submission ID
PQ215670.1.L/PQ215669.1.M/PQ215668.1.S
Submitting group
Date submitted
2026-05-09 18:05:13 UTC
Date released
2026-05-09 18:06:54 UTC
Earliest release date
2024-09-25

Alignment and QC

Length L
6477 (98.7%)
# of SNPs L
377
Length M
3647 (99.1%)
# of SNPs M
207
# of inserted bases M
8
Length S
1848 (98.5%)
# of SNPs S
120
# of inserted bases S
7
# of deleted bases S
2

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

  • T47C
  • G53A
  • C74T
  • A86G
  • G89A
  • C131T
  • T143C
  • C146T
  • C147T
  • G149A
  • C155T
  • T182C
  • A200G
  • A218G
  • A296G
  • T297C
  • A302G
  • T326C

M

  • T74C
  • G114A
  • C159A
  • C174T
  • C190T
  • A192G
  • C231T
  • C243T
  • A264G
  • T324C
  • G339A
  • T345C
  • A360G
  • T363C
  • T387C
  • C394T
  • C408T
  • T414C

S

  • T61C
  • G63A
  • G66A
  • G120A
  • A135G
  • C172T
  • A219G
  • T225C
  • A240G
  • T244C
  • A261G
  • T306C
  • A312G
  • G315A
  • A318G
  • T357C
  • T363C
  • T366C
Deletions

S

1443, 1573
Insertions

M

ins_3504:ATATACAT

S

ins_1482:CC, ins_1555:G, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:V8A
  • GPC:F216L
  • GPC:H294Y
  • GPC:V346I
  • GPC:T353I
  • GPC:V499I
  • GPC:I537V
  • GPC:T641I
  • GPC:T938A
  • GPC:T1023A
  • GPC:V1115I

NSs

  • NSs:Q5R
  • NSs:E33G
  • NSs:L35S
  • NSs:Q40R
  • NSs:N47S
  • NSs:I62T

RdRp

  • RdRp:T141V
  • RdRp:L277S
  • RdRp:S338A
  • RdRp:R346K
  • RdRp:N364S
  • RdRp:D780N
  • RdRp:S876A
  • RdRp:N1033D
  • RdRp:D1303E
  • RdRp:S1440N
  • RdRp:K1750R
  • RdRp:Q1965H
  • RdRp:I2109V
  • RdRp:K2116E
Deletions
N/A
Insertions
N/A

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