PPD_00JM0BK.1

Argentina/PPD_00JM0BK.1/2019

D. O. Alonso, S. D. Kehl, R. M. Coelho, N. Periolo, J. Campos, T. Poklepovich Caride, U. Perez-Sautu, M. Sanchez-Lockhart, G. Palacios, C. M. Bellomo & V. P. Martinez

Malbran Institute, Virology

Sample details

Collection date

2019

Sampling location

Argentina (Entre Rios)

Isolate name

ER19-SP1693

Data use terms

Changed	User	Data use terms
2026-05-09 18:05	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession S

OR908896.1

NCBI release date

2024-09-06

Host

human (Homo sapiens)

Submission details

Submission ID

OR908896.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-09 18:05:13 UTC

Date released

2026-05-09 18:06:54 UTC

Earliest release date

2024-09-06

Alignment and QC

Length S

1925 (99.3%)

# of SNPs S

304

# of inserted bases S

# of deleted bases S

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

S

G28A
G63A
G66A
C72T
G120A
G129A
G133A
A135G
C156G
T202C
A219G
T225C
G231A
T244C
T262C
A321G
T327C
G339C

Deletions

S

1335, 1398-1400, 1500, 1527-1532, 1567-1572, 1589, 1632, 1633, 1639, 1650, 1684-1688, 1745, 1746

Insertions

S

ins_1343:TAAGAGC, ins_1351:CCAT, ins_1355:GCCAGAACTAGTCAATATCTG, ins_1358:GTTATGTTGGTTGGGTGG, ins_1383:T, ins_1451:A, ins_1483:C, ins_1546:ATGTTAAGTTCATA, ins_1586:GAC, ins_1596:GATTAAGTAGATAGAT, ins_1660:AA, ins_1666:GTTAATCA, ins_1756:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references