PPD_00JLZUM.1

Switzerland/PPD_00JLZUM.1/2022

R. Zuest, R. Aeckermann-Gaeumann, N. Liechti, D. Siegrist, S. Ryter, J. Portmann, C. Beuret, R. Koller, C. Staehelin, A. Kuenzli, J. Marschall, S. Rothenberger, O. Engler, R. Ackermann-Gaeumann & N. Lenz

Spiez Laboratory, Biology Department

Sample details

Collection date

2022

Sampling location

Switzerland

Isolate name

ANDV-CH-LS-2022

Data use terms

Changed	User	Data use terms
2026-05-09 18:05	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession L

OR405522.1

INSDC accession M

OR405521.1

INSDC accession S

OR405520.1

NCBI release date

2023-10-02

Host

human (Homo sapiens)

Submission details

Submission ID

OR405522.1.L/OR405521.1.M/OR405520.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-09 18:05:13 UTC

Date released

2026-05-09 18:06:54 UTC

Earliest release date

2023-10-02

Alignment and QC

Length S

1760 (95.7%)

# of SNPs S

113

# of inserted bases S

# of deleted bases S

Length L

6244 (95.1%)

# of SNPs L

376

# of unknown bases L

Length M

3425 (93.2%)

# of SNPs M

192

# of unknown bases M

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

C74T
C131T
C146T
G149A
C155T
C173T
A200G
A218G
G266A
A296G
T297C
A302G
A320G
T326C
T329C
T344C
C347T
T348C

M

T74C
C111T
G114A
C147T
C174T
C190T
A192G
C231T
A264G
G339A
C342T
T345C
A360G
T363C
T387C
C394T
G420A
A456T

S

G63A
G66A
G120A
A135G
A219G
T225C
T244C
T306C
A312G
G315A
A318G
T357C
T363C
G378A
C417T
C444A
T454C
C459T

Deletions

S

1443, 1496-1528, 1573

Insertions

S

ins_1555:A, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references