PPD_00JLVZF.1

Brazil/PPD_00JLVZF.1/2006

A. Guterres, R. C. de Oliveira, J. Fernandes, C. G. Schrago, E. R. de Lemos, R. C. Oliveira & E. R. S. Lemos

Instituto Oswaldo Cruz - FIOCRUZ, Laboratorio de Hantaviroses e Rickettsioses

Sample details

Collection date

2006

Sampling location

Brazil (Goias State)

Isolate name

LBCE 9480

Data use terms

Changed	User	Data use terms
2026-05-09 18:05	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession S

KP202360.1

NCBI release date

2015-09-15

Host

hairy-tailed bolo mouse (Necromys lasiurus)

Submission details

Submission ID

KP202360.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-09 18:05:13 UTC

Date released

2026-05-09 18:05:52 UTC

Earliest release date

2015-09-15

Alignment and QC

Length S

1858 (100%)

# of SNPs S

353

# of inserted bases S

# of deleted bases S

# of frame shifts S

Frame shifts S

N:420-429(nt:1300-1329)

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

S

C50A
G63A
A78C
T105C
C106A
A111G
G120A
C126A
G129A
G132A
G138T
G141T
G150A
C156G
G165A
C172T
A178G
A189G

Deletions

S

1299, 1327-1334, 1410, 1411, 1417, 1467-1475, 1495, 1500-1514, 1530-1537, 1561, 1631, 1647, 1648, 1674-1676, 1745, 1746, 1755

Insertions

S

ins_1354:GTGGTGGTCAGTGTG, ins_1381:G, ins_1425:TC, ins_1483:C, ins_1545:C, ins_1553:ACCATGT, ins_1573:G, ins_1595:GTTTGC, ins_1661:ATC, ins_1762:TA, ins_1841:T, ins_1848:T, ins_1852:C

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references