PPD_00JLVYH.1

Peru/PPD_00JLVYH.1/2010

H. Razuri, R. Tokarz, B. M. Ghersi, G. Salmon-Mulanovich, M. C. Guezala, C. Albujar, A. P. Mendoza, Y. O. Tinoco, C. Cruz, M. Silva, A. Vasquez, V. Pacheco, U. Stroher, L. W. Guerrero, D. Cannon, S. T. Nichol, D. L. Hirschberg, W. I. Lipkin, D. G. Bausch & J. M. Montgomery

Columbia University, Center for Infection and Immunity

Sample details

Collection date

2010

Sampling location

Peru

Isolate name

769

Data use terms

Changed	User	Data use terms
2026-05-09 18:05	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession L

KF581136.1

INSDC accession M

KF581135.1

INSDC accession S

KF581134.1

NCBI release date

2014-03-16

Host

bristly mouse (Neacomys spinosus)

Submission details

Submission ID

KF581136.1.L/KF581135.1.M/KF581134.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-09 18:05:13 UTC

Date released

2026-05-09 18:05:52 UTC

Earliest release date

2014-03-16

Alignment and QC

Length L

572 (8.72%)

# of SNPs L

129

Length S

1068 (57.1%)

# of SNPs S

178

Length M

1673 (46.6%)

# of SNPs M

317

# of inserted bases M

# of deleted bases M

# of ambiguous bases M

# of frame shifts M

Frame shifts M

GPC:608-610(nt:1873-1881),GPC:1139(nt:3465-3468)

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

T4259A
A4265G
A4268T
C4289T
C4290A
G4292A
A4294T
T4301G
A4313T
C4316T
G4319A
A4325T
C4326T
T4328A
T4331G
T4337A
G4352T
G4354A

M

T1776C
C1779T
A1788G
A1794G
G1795T
T1800A
C1809A
T1810C
G1812T
C1818T
T1825G
C1827T
A1828G
A1836G
G1839A
A1866G
G1869A
A1879G

S

G66A
A90G
A111G
G120A
C172T
A183G
C184A
C188G
T202C
A219G
A222G
T225C
G231A
T244A
T262C
T306C
A312G
A321G

Deletions

M

1872, 3433-3464, 3471-3475

Insertions

M

ins_1881:A

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references