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PPD_00JLUXL.1

Bolivia/PPD_00JLUXL.1/2008
C. D. Cruz, B. M. Forshey, E. Vallejo, R. Agudo, J. Vargas, D. L. Blazes, C. Guevara, V. A. Laguna-Torres, E. S. Halsey, T. J. Kochel, V. A. Laguna & C. L. Guevara

NAMRU-6, Virology

Sample details

Collection date
2008
Sampling location
Bolivia
Isolate name
FVB554

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 18:05insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession M
INSDC accession S
NCBI release date
2011-09-21

Host

Host

Submission details

Submission ID
JF750422.1.M/JF750419.1.S
Submitting group
Date submitted
2026-05-09 18:05:13 UTC
Date released
2026-05-09 18:05:52 UTC
Earliest release date
2011-09-21

Alignment and QC

Length M
1330 (36.2%)
# of SNPs M
256
Length S
1287 (68.8%)
# of SNPs S
212

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

M

  • A1683G
  • A1686G
  • C1695T
  • G1699A
  • A1701C
  • C1708T
  • A1725T
  • G1745A
  • A1746G
  • T1755C
  • C1758A
  • A1764G
  • T1770C
  • A1788G
  • A1794G
  • G1795T
  • C1809A
  • T1810C

S

  • C50A
  • T61C
  • G63A
  • G66A
  • C72T
  • A90G
  • G120A
  • G132A
  • G142A
  • C172T
  • A183G
  • C184A
  • T202C
  • T225C
  • G231A
  • A240G
  • T244A
  • T262C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:V550I
  • GPC:H553Y
  • GPC:R565K
  • GPC:I579M
  • GPC:A582S
  • GPC:S592A
  • GPC:I593V
  • GPC:K610R
  • GPC:K615R
  • GPC:C642L
  • GPC:I644L
  • GPC:V645I
  • GPC:I646V
  • GPC:M656L
  • GPC:S681A
  • GPC:K693R
  • GPC:Q743K
  • GPC:S752A

N

  • N:T3N
  • N:V34M
  • N:L68M
  • N:A121S
  • N:G226S
  • N:D234E
  • N:E238D
  • N:A242D
  • N:V252S
  • N:A253P
  • N:S259A
  • N:M263A
  • N:E274D
  • N:I281V
  • N:E297D
  • N:S332A
  • N:S411A

NSs

  • NSs:R4K
  • NSs:D21G
  • NSs:L35S
  • NSs:G37D
  • NSs:Q40R
  • NSs:I62T
Deletions
N/A
Insertions
N/A

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