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PPD_00JJTLD.1

USA/PPD_00JJTLD.1/2025-08-13
P. Dykema, N. Hanson, Q. Yang, D. Lucas, S. Jr. Grimmet, J. Johnson & K. Waterman

Washington State Department of Health Public Health Labs, Division of Disease Control and Statistics

Sample details

Collection date
2025-08-13
Sampling location
USA (Oregon)
Isolate name
WNV/USA/WAPHL-156707/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-22 16:52insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
1A

INSDC

INSDC accession
BioProject accession
NCBI release date
2026-04-14
NCBI update date
2026-04-14

Host

Host

Submission details

Submission ID
PZ260028.1
Submitting group
Date submitted
2026-04-22 16:52:35 UTC
Date released
2026-04-22 17:01:21 UTC
Earliest release date
2026-04-14

Alignment and QC

Length
10791 (97.8%)
# of SNPs
122

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G222T
  • C381T
  • G550A
  • T585C
  • A630G
  • A654G
  • C660T
  • A1023G
  • C1047T
  • A1320G
  • T1442C
  • C1465T
  • C1473T
  • T1515C
  • C1599T
  • T1650C
  • A1683G
  • T1762C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:L95F

NS4A

  • NS4A:A85T

NS4B

  • NS4B:R37S
  • NS4B:T48A

NS5

  • NS5:Y202H
  • NS5:K314R
  • NS5:E390K
  • NS5:A749V

env

  • env:V159A
  • env:L167F

prM

  • prM:A29T
Deletions
N/A
Insertions
N/A

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