PPD_00JJNEX.1

Turkey/PPD_00JJNEX.1/2023-06-01

Q. Lin, N. Elaldi, M. Yigit, B. Yildiz, R. Hewson, M. Lopez-Garcia, G. Lythe, A. N. Pektas, B. Koksal, T. N. Tasseten, A. Deniz, H. Bedir, Y. Cakir Kiymaz, Z. Vatansever, C. Molina-Paris & T. Leitner

Kafkas University, Department of Parasitology

Sample details

Collection date

2023-06-01

Sampling location

Turkey (Sivas, Zara, Akoren)

Isolate name

TRKAU/T-363-8/Zara/2023

Data use terms

Changed	User	Data use terms
2026-04-22 01:35	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession L

PX875104.1

INSDC accession M

PX874997.1

NCBI release date

2026-04-19

Host

hard ticks; hardbacked ticks; scale ticks (Hyalomma marginatum)

Submission details

Submission ID

PX875104.1.L/PX874997.1.M

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-04-22 01:35:08 UTC

Date released

2026-04-22 01:47:32 UTC

Earliest release date

2026-04-19

Alignment and QC

Length L

12122 (99.9%)

# of SNPs L

1316

# of inserted bases L

# of deleted bases L

Length M

5336 (99.5%)

# of SNPs M

1043

# of inserted bases M

# of deleted bases M

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

G23T
G32A
A35G
A42T
G43C
T49C
A53G
T58C
C59T
C63T
C64G
T66C
A72G
A73C
A91G
G93A
C100T
A109G

M

T40A
G50A
A51G
T67C
T68C
A69G
T71A
G76C
A80G
T83C
G84A
T86C
C92T
T100C
T102C
C103T
A108G
A112G

Deletions

L

12093, 12094

M

321-323

Insertions

L

ins_67:C, ins_11924:G, ins_12108:TTCATTATTTGAAGGGTGTGGGGGGAACGA

M

ins_5171:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references