This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00GPPUT.1

DENV-1/India/3/2025-10-18
B. K. Pati, A. Sarfraz, M. Z. Farooque & A. Kumar

All India Institute of Medical Sciences, Microbiology

Sample details

Collection date
2025-10-18
Sampling location
India (Bihar, Vaishali)
Isolate name
3

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:27insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2026-04-05
NCBI update date
2026-04-05

Host

Host

Submission details

Submission ID
PZ225548.1
Submitting group
Date submitted
2026-04-15 08:24:49 UTC
Date released
2026-04-15 12:43:58 UTC
Earliest release date
2026-04-05

Lineage & Serotype

Lineage
1III_A
Serotype
DENV-1

Alignment and QC

Length
468 (4.36%)
# of SNPs
25

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • T171G
  • T208C
  • C214T
  • T230A
  • T244C
  • T274C
  • G302A
  • G349A
  • A355G
  • A363G
  • T368C
  • G388A
  • T397C
  • T442C
  • C443T
  • C451A
  • G466A
  • G480C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001477.1 reference

Substitutions

C

  • C:V26G
  • C:L46M
  • C:G70S
  • C:N90S

prM

  • prM:S15T
  • prM:T59A
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue