This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00FRXXA.1

Guinea/PPD_00FRXXA.1/2024-12-12
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, M. Y. Kartashov, A. V. Shipovalov, A. B. Ibrahim, E. A. Basov, A. P. Smolina, N. P. Guseva, T. A. Polunina, N. V. Kotova, S. D. Katyshev, S. Boumbaly & M. S. Traore

Russian Antiplague Research Institute 'Microbe', Microbiology

Sample details

Collection date
2024-12-12
Sampling location
Guinea
Isolate name
663

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:20insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2025-08-09

Host

Host

Submission details

Submission ID
PV987606.1.L/PV987598.1.M/PV987590.1.S
Submitting group
Date submitted
2026-04-15 08:20:20 UTC
Date released
2026-04-15 08:51:48 UTC
Earliest release date
2025-08-09

Lineage

Segment S Lineage
V

Alignment and QC

Length L
11915 (91.6%)
# of SNPs L
486
# of inserted bases L
3
# of unknown bases L
826
Length S
1654 (91.8%)
# of SNPs S
195
# of inserted bases S
1
# of unknown bases S
118
Length M
3828 (44.5%)
# of SNPs M
422
# of unknown bases M
1439

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • C133T
  • C205T
  • G217A
  • A220G
  • C223T
  • T229C
  • T253C
  • T254A
  • G286A
  • C313T
  • A316G
  • C331T
  • T340C
  • C343T
  • C445T
  • T517C
  • C541T
  • G553A

M

  • C651T
  • G660A
  • C662T
  • G667C
  • A668T
  • A676G
  • A677G
  • T680A
  • G681C
  • C683A
  • A684T
  • T686C
  • G693A
  • A696T
  • T698C
  • G699A
  • A700G
  • C704A

S

  • G20T
  • G54A
  • G134A
  • G136A
  • C142T
  • C154T
  • T155C
  • C166T
  • G169A
  • T175C
  • C178A
  • T182C
  • G189A
  • G190A
  • C208T
  • C235T
  • C244T
  • T250A
Deletions
N/A
Insertions

L

ins_6460:AAA

S

ins_1579:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:A190T
  • GPC:G192A
  • GPC:N196K
  • GPC:D197Q
  • GPC:S198C
  • GPC:A201T
  • GPC:T202S
  • GPC:E203R
  • GPC:H204Q
  • GPC:E206M
  • GPC:S207P
  • GPC:L208S
  • GPC:S211P
  • GPC:P214S
  • GPC:G215N
  • GPC:T221A
  • GPC:I223P
  • GPC:V224N

NP

  • NP:V27I
  • NP:Y34H
  • NP:R45K
  • NP:S109N
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S301G
  • NP:V436I

RdRp

  • RdRp:Y60N
  • RdRp:N206Y
  • RdRp:C422Y
  • RdRp:S498N
  • RdRp:I505T
  • RdRp:C648S
  • RdRp:K673R
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:G778D
  • RdRp:N779S
  • RdRp:S782D
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:A1038T
  • RdRp:G1164E
Deletions
N/A
Insertions

RdRp

ins_RdRp:2129:E

Report an issue with this sequence or metadata

Create GitHub issue