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PPD_00FRXWC.1

Guinea/PPD_00FRXWC.1/2024-12-11
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, M. Y. Kartashov, A. V. Shipovalov, A. B. Ibrahim, E. A. Basov, A. P. Smolina, N. P. Guseva, T. A. Polunina, N. V. Kotova, S. D. Katyshev, S. Boumbaly & M. S. Traore

Russian Antiplague Research Institute 'Microbe', Microbiology

Sample details

Collection date
2024-12-11
Sampling location
Guinea
Isolate name
650

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:20insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2025-08-09

Host

Host

Submission details

Submission ID
PV987605.1.L/PV987597.1.M/PV987589.1.S
Submitting group
Date submitted
2026-04-15 08:20:20 UTC
Date released
2026-04-15 08:51:48 UTC
Earliest release date
2025-08-09

Lineage

Segment S Lineage
IV.1

Alignment and QC

Length L
11970 (92.2%)
# of SNPs L
417
# of inserted bases L
3
# of unknown bases L
799
Length S
1655 (93.2%)
# of SNPs S
198
# of inserted bases S
1
# of unknown bases S
96
Length M
2921 (38.6%)
# of SNPs M
301
# of unknown bases M
851

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G93A
  • G112C
  • A113G
  • C133T
  • C193T
  • C205T
  • G217A
  • A220G
  • C223T
  • T229C
  • T253C
  • T254A
  • G286A
  • G301A
  • C313T
  • A316G
  • C331T
  • T340C

M

  • T1552A
  • A1555G
  • A1556G
  • G1558A
  • A1577T
  • T1586A
  • T1587C
  • G1589A
  • G1592A
  • G1595A
  • G1604A
  • A1607G
  • A1628C
  • A1629C
  • C1631T
  • C1634T
  • T1637C
  • T1644C

S

  • G20T
  • G54A
  • C82T
  • A118G
  • G136A
  • C142T
  • C154T
  • T155C
  • C166T
  • G169A
  • T175C
  • C178A
  • T182C
  • G189A
  • G190A
  • C208T
  • C217T
  • C235T
Deletions
N/A
Insertions

L

ins_6457:AAN

S

ins_1579:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:K488R
  • GPC:G489E
  • GPC:T513P
  • GPC:P523S
  • GPC:S524D
  • GPC:D525G
  • GPC:I541V
  • GPC:G543N
  • GPC:V578I
  • GPC:R579K
  • GPC:T589S
  • GPC:G590E
  • GPC:K591R
  • GPC:N592P
  • GPC:V598T
  • GPC:K601E
  • GPC:Y606F
  • GPC:R609K

NP

  • NP:Y34H
  • NP:R45K
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:A271S
  • NP:S301G
  • NP:Q405L
  • NP:V436I
  • NP:T439K

RdRp

  • RdRp:S6N
  • RdRp:I13V
  • RdRp:Y60N
  • RdRp:N206Y
  • RdRp:C422Y
  • RdRp:S498N
  • RdRp:I505T
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:P774L
  • RdRp:S782D
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:N885K
  • RdRp:A1038T
  • RdRp:K1167R
  • RdRp:V1228I
Deletions
N/A
Insertions

RdRp

ins_RdRp:2127:X

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