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PPD_00FRXJ2.1

France/PPD_00FRXJ2.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Sampling location
France
Isolate name
590

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:20insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession M
INSDC accession S
NCBI release date
2025-08-10

Host

Host

Submission details

Submission ID
PV976884.1.M/PV976887.1.S
Submitting group
Date submitted
2026-04-15 08:20:20 UTC
Date released
2026-04-15 08:51:48 UTC
Earliest release date
2025-08-10

Lineage

Segment S Lineage
III

Alignment and QC

Length S
1673 (100%)
# of SNPs S
127
# of inserted bases S
1
Length M
5206 (36.7%)
# of SNPs M
640
# of inserted bases M
98
# of deleted bases M
55
# of unknown bases M
3191
# of frame shifts M
7
Frame shifts M
GPC:18-74(nt:144-314),GPC:95-122(nt:374-456),GPC:318-326(nt:1043-1070),GPC:352-524(nt:1146-1664),GPC:543-560(nt:1718-1771),GPC:1084-1148(nt:3340-3535),GPC:1162-1685(nt:3574-5147)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • G50T
  • A51G
  • A52T
  • G53A
  • G56T
  • A57G
  • T58A
  • T59A
  • G60A
  • A64G
  • T65A
  • C66T
  • A69G
  • A70T
  • T71G
  • T72A
  • C74G
  • G76A

S

  • G20T
  • A50G
  • G54A
  • G67A
  • G99A
  • A124G
  • C166T
  • C178A
  • G189A
  • T199C
  • G202A
  • A209G
  • C235T
  • C241T
  • C244T
  • A247G
  • G271A
  • C295T
Deletions

M

315, 316, 346-373, 1029-1042, 1144, 1145, 1515, 1665, 1716, 1717, 1772, 3536, 3537, 3573, 3674
Insertions

M

ins_143:GCGGGGTTGCCAGT, ins_456:GCTCCAGGTGCATCCACTCCAAGCAACACCACATCAAACAAACCAGATGTCAACTCATTCACAT, ins_1070:AC, ins_1295:A, ins_3339:G, ins_3383:T, ins_5084:TTGATG, ins_5108:G, ins_5145:GACGAATC

S

ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:M1K
  • GPC:H2F
  • GPC:I3M
  • GPC:S4L
  • GPC:M6T
  • GPC:Y7N
  • GPC:A8F
  • GPC:I9F
  • GPC:L10F
  • GPC:L12Q
  • GPC:Q13L
  • GPC:L14Y
  • GPC:C15G
  • GPC:G16V
  • GPC:L17A
  • GPC:P80I
  • GPC:P81S
  • GPC:I82T

NP

  • NP:R15K
  • NP:R45K
  • NP:S52G
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
  • NP:S301G
  • NP:K428R
  • NP:V436I
Deletions

GPC

GPC:75, GPC:86-94, GPC:313-317, GPC:327, GPC:328, GPC:525, GPC:528, GPC:542, GPC:1149, GPC:1161
Insertions

GPC

ins_GPC:131:DVNSFTSPILEAKSSP, ins_GPC:1157:EEWX

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