This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00FRW4Y.1

Tajikistan/PPD_00FRW4Y.1/2023-05-25
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

UK Health Security Agency, Research & Evaluation

Sample details

Collection date
2023-05-25
Sampling location
Tajikistan
Isolate name
CCHFV_12_167

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:20insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession S
NCBI release date
2025-04-05

Host

Host

Submission details

Submission ID
PV390611.1.S
Submitting group
Date submitted
2026-04-15 08:20:20 UTC
Date released
2026-04-15 08:51:48 UTC
Earliest release date
2025-04-05

Lineage

Segment S Lineage
IV.2

Alignment and QC

Length S
1248 (72.5%)
# of SNPs S
163
# of inserted bases S
1
# of ambiguous bases S
34

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • G428A
  • G429A
  • A439G
  • C445T
  • T446C
  • G448C
  • A460G
  • C478T
  • C484A
  • C487T
  • A490G
  • T496C
  • C497T
  • G499A
  • A503C
  • C505T
  • C514T
  • G538A
Deletions
N/A
Insertions

S

ins_1579:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue