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PPD_00FRUBL.1
Download
Download FASTA
Download metadata TSV
Pakistan/PPD_00FRUBL.1/2024-07-12
M. Umair,
R. Hakim,
Z. Jamal &
M. Salman
National Institute of Health, Department of Virology
Sample details
Collection date
2024-07-12
Sampling location
Pakistan (Punjab)
Isolate name
CCHF/NIHPAK-37/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-15 08:20
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession L
PQ523728.1
INSDC accession M
PQ523725.1
INSDC accession S
PQ523721.1
NCBI release date
2024-11-12
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PQ523728.1.L/PQ523725.1.M/PQ523721.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-15 08:20:20 UTC
Date released
2026-04-15 08:51:48 UTC
Earliest release date
2024-11-12
Lineage
Segment S Lineage
IV.2
Alignment and QC
Length L
12140 (99.9%)
# of SNPs L
1631
# of inserted bases L
47
Length S
1655 (98.9%)
# of SNPs S
213
# of inserted bases S
1
Length M
5345 (99.3%)
# of SNPs M
1562
# of inserted bases M
48
# of deleted bases M
30
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
G
43
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
T
131
A
Show more
M
G
50
C
A
51
G
A
52
T
G
56
T
T
58
A
T
59
A
T
65
A
C
66
T
T
67
C
A
69
G
A
70
T
T
71
G
T
72
A
G
76
A
A
80
G
C
81
T
C
82
T
T
83
G
Show more
S
T
48
C
G
54
A
A
61
G
C
64
T
G
67
A
G
99
A
A
118
G
C
142
T
T
157
C
C
166
T
G
169
A
C
178
A
T
182
C
C
217
T
G
229
A
C
235
T
T
250
A
G
262
A
Show more
Deletions
M
795-809, 5172-5186
Insertions
L
ins_58:T, ins_11917:CA, ins_12053:CTAC, ins_12086:CTACTATTCCAC, ins_12108:TTTATTATTTCTGGGGTGTGGGGGGAAC
M
ins_236:CCGTCAACAGACACTGCC, ins_313:CACTGATCCCTC, ins_457:CAACTCGCCTACACT, ins_5202:CA, ins_5248:C
S
ins_1581:C
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
S
GPC:
H
2
M
GPC:
I
3
L
GPC:
S
4
L
GPC:
L
5
T
GPC:
M
6
N
GPC:
Y
7
F
GPC:
A
8
I
GPC:
I
9
L
GPC:
L
10
C
GPC:
C
11
Q
GPC:
Q
13
F
GPC:
L
14
W
GPC:
C
15
S
GPC:
L
17
S
GPC:
E
19
V
GPC:
H
21
S
GPC:
S
23
G
Show more
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
Show more
Deletions
GPC
GPC:176-210
Insertions
GPC
ins_GPC:77:ESSTDPSVTNKDTSP, ins_GPC:229:NTTGQTYPTTLETSPKTQMIQGQQTTTPVT
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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