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PPD_00FRR6Z.1
Download
Download FASTA
Download metadata TSV
France/PPD_00FRR6Z.1/2023
C. Picard &
S. Baize
Institut Pasteur, Virology
Sample details
Collection date
2023
Sampling location
France
Isolate name
3AK6
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-15 08:20
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession L
PP067065.1
INSDC accession M
PP067079.1
INSDC accession S
PP067053.1
NCBI release date
2024-01-21
Host
Host
hard ticks; hardbacked ticks; scale ticks (Hyalomma marginatum)
Submission details
Submission ID
PP067065.1.L/PP067079.1.M/PP067053.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-15 08:20:20 UTC
Date released
2026-04-15 08:51:48 UTC
Earliest release date
2024-01-21
Lineage
Segment S Lineage
III
Alignment and QC
Length L
11838 (97.8%)
# of SNPs L
244
Length M
4335 (80.8%)
# of SNPs M
373
Length S
1449 (86.7%)
# of SNPs S
107
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
93
A
A
220
G
T
254
A
A
298
G
C
313
T
T
340
C
T
550
A
G
553
A
C
568
T
G
619
A
C
673
T
C
727
T
A
745
G
G
766
A
T
781
C
T
790
C
C
829
T
A
859
G
Show more
M
G
818
A
A
833
G
A
840
G
T
860
C
T
866
C
T
872
C
T
887
C
G
890
C
T
897
C
A
899
T
G
908
A
A
911
T
T
938
C
A
941
G
G
944
A
A
955
G
T
968
C
C
983
T
Show more
S
G
67
A
G
99
A
G
100
A
C
178
A
G
189
A
T
199
C
G
202
A
G
229
A
C
235
T
A
247
G
G
271
A
C
295
T
A
298
G
A
322
G
A
327
G
G
346
A
A
358
C
C
370
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
K
250
E
GPC:
Q
273
H
GPC:
K
288
R
GPC:
T
298
A
GPC:
K
302
E
GPC:
P
334
H
GPC:
G
336
K
GPC:
L
337
P
GPC:
E
341
K
GPC:
I
377
V
GPC:
V
385
A
GPC:
V
433
L
GPC:
I
445
A
GPC:
A
448
T
GPC:
Y
455
H
GPC:
V
459
T
GPC:
D
484
G
GPC:
A
511
V
Show more
NP
NP:
R
15
K
NP:
R
45
K
NP:
K
91
R
NP:
T
124
A
NP:
G
125
N
NP:
L
179
Q
NP:
H
195
R
NP:
I
246
V
NP:
S
301
G
NP:
T
418
I
NP:
K
428
R
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
I
223
M
RdRp:
I
261
M
RdRp:
I
505
T
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
I
783
V
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
G
1029
S
RdRp:
A
1038
T
RdRp:
G
1047
E
RdRp:
H
1161
N
RdRp:
D
1173
N
RdRp:
V
1228
I
RdRp:
N
1244
S
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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