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PPD_00FRR19.1

France/PPD_00FRR19.1/2023
G. Piorkowski, P. Kiwan, S. Masse, N. Ayhan, R. Charrel, X. de Lamballerie & A. Falchi

IHU mediterranee, UMR190 Unite des Virus Emergents U1207

Sample details

Collection date
2023
Sampling location
France
Isolate name
1207

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:20insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2024-06-25

Host

Host

Submission details

Submission ID
PP025040.1.L/PP025039.1.M/PP025038.1.S
Submitting group
Date submitted
2026-04-15 08:20:20 UTC
Date released
2026-04-15 08:51:48 UTC
Earliest release date
2024-06-25

Lineage

Segment S Lineage
I

Alignment and QC

Length S
1498 (60.2%)
# of SNPs S
213
# of inserted bases S
7
# of deleted bases S
11
# of unknown bases S
495
Length L
11246 (92%)
# of SNPs L
228
# of deleted bases L
7
# of unknown bases L
119
Length M
5075 (88.2%)
# of SNPs M
1256
# of inserted bases M
48
# of deleted bases M
50
# of unknown bases M
345
# of frame shifts M
1
Frame shifts M
GPC:86-98(nt:348-386)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • A859T
  • A901G
  • C904T
  • G951A
  • G961A
  • C1015T
  • C1016T
  • C1019T
  • A1120G
  • G1174A
  • C1240T
  • A1338G
  • A1354T
  • T1420C
  • C1495T
  • A1501G
  • C1549T
  • A1555G

M

  • G242T
  • T246G
  • T247C
  • G248A
  • T249G
  • C250A
  • T251A
  • T253C
  • T254A
  • A255G
  • C256T
  • A257G
  • T259C
  • T260G
  • G261A
  • A262G
  • C264A
  • C266G

S

  • C160T
  • T163C
  • C166T
  • G171A
  • T172C
  • T175G
  • C178G
  • T181C
  • T182C
  • G184T
  • G196A
  • T199C
  • C208T
  • A209G
  • C214A
  • G229A
  • G232A
  • C235T
Deletions

L

12026-12032

M

555-569, 5166-5200

S

1506-1516
Insertions

M

ins_347:GAAA, ins_386:CAGAAACGCGCAGGACTCAAAACCCAAGCACC, ins_5264:TTGCACCTTCAA

S

ins_1545:AGATTGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:L52A
  • GPC:S53E
  • GPC:I54T
  • GPC:T55V
  • GPC:L56P
  • GPC:D57S
  • GPC:P58T
  • GPC:S59T
  • GPC:T60I
  • GPC:V61N
  • GPC:T64D
  • GPC:P66Q
  • GPC:A67V
  • GPC:S68T
  • GPC:G69T
  • GPC:L70D
  • GPC:E71Y
  • GPC:V76S

NP

  • NP:S39N
  • NP:S52G
  • NP:F73Y
  • NP:A100T
  • NP:T124A
  • NP:G125N
  • NP:A154S
  • NP:H195K
  • NP:V198I
  • NP:D199E
  • NP:I220V
  • NP:T420S

RdRp

  • RdRp:R292Q
  • RdRp:H314Y
  • RdRp:N421S
  • RdRp:I505T
  • RdRp:C648R
  • RdRp:R764K
  • RdRp:L765P
  • RdRp:T767A
  • RdRp:D771E
  • RdRp:E776K
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:R896S
  • RdRp:G1047E
  • RdRp:V1228I
  • RdRp:N1367D
  • RdRp:P1660T
Deletions

GPC

GPC:108-111, GPC:155-159
Insertions

GPC

ins_GPC:131:DVNSLTSPILEAKSSP

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