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PPD_00FRQTR.1
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Download FASTA
Download metadata TSV
Pakistan/PPD_00FRQTR.1/2023-05-01
M. Umair,
S. A. Haider,
Z. Jamal,
M. Ammar,
R. Hakim,
Q. Ali &
M. Salman
National Institute of Health, Department of Virology
Sample details
Collection date
2023-05-01
Sampling location
Pakistan
Isolate name
CCHF/NIHPAK-30/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-15 08:20
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession L
OR964924.1
INSDC accession M
OR964935.1
INSDC accession S
OR964913.1
NCBI release date
2023-12-26
Host
Host
human (Homo sapiens)
Submission details
Submission ID
OR964924.1.L/OR964935.1.M/OR964913.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-15 08:20:20 UTC
Date released
2026-04-15 08:51:48 UTC
Earliest release date
2023-12-26
Lineage
Segment S Lineage
IV.2
Alignment and QC
Length S
1656 (99%)
# of SNPs S
211
# of inserted bases S
1
Length L
12134 (99.9%)
# of SNPs L
1658
# of inserted bases L
42
# of unknown bases L
1
Length M
5336 (97.1%)
# of SNPs M
990
# of inserted bases M
1
# of unknown bases M
126
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
G
43
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
T
131
A
Show more
M
G
50
T
G
56
A
A
57
C
A
70
G
T
71
A
A
80
G
T
83
C
G
84
T
C
85
T
T
86
C
C
92
T
C
96
T
T
98
C
T
100
C
T
102
C
T
105
C
A
108
C
A
112
G
Show more
S
T
48
C
G
54
A
A
55
G
A
61
G
C
64
T
G
67
A
A
85
G
G
91
A
G
99
A
T
157
C
C
166
T
C
178
A
C
187
T
G
190
A
G
196
A
A
209
G
C
214
T
C
217
T
Show more
Deletions
N/A
Insertions
L
ins_58:T, ins_11917:CA, ins_12054:TACAATTT, ins_12083:ACTATTC, ins_12108:TTTATTATTTCTGGGGTGTGGGGG
M
ins_5171:C
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
I
9
V
GPC:
Q
13
K
GPC:
C
15
W
GPC:
G
16
S
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
P
GPC:
H
24
S
GPC:
R
28
Q
GPC:
N
30
S
GPC:
K
31
N
GPC:
T
32
A
GPC:
D
33
S
Show more
NP
NP:
R
15
K
NP:
S
52
G
NP:
S
65
A
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
94
Q
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
C
RdRp:
I
223
V
RdRp:
N
236
S
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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