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PPD_00DTNUP.1
Download
Download FASTA
Download metadata TSV
USA/PPD_00DTNUP.1/2025-06-13
P. Roychoudhury,
H. Xie,
H. G. Kim &
A. Greninger
University of Washington, Laboratory Medicine and Pathology
Sample details
Collection date
2025-06-13
Sampling location
USA (Washington)
Isolate name
USA/WA-UW-09722/2025
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-15 08:08
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
B2
INSDC
INSDC accession
PX470885.1
NCBI release date
2025-10-28
NCBI update date
2025-10-28
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PX470885.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-15 08:07:28 UTC
Date released
2026-04-15 09:42:55 UTC
Earliest release date
2025-10-28
Alignment and QC
Length
13101 (98.7%)
# of SNPs
2458
# of inserted bases
16
# of deleted bases
85
# of frame shifts
2
# of stop codons
1
Frame shifts
G:148-155(nt:6688-6711),G:204-225(nt:6854-6920)
Stop Codons
SH:177
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
G
63
A
T
70
C
A
72
G
C
78
T
G
81
A
G
105
A
G
126
A
T
129
C
A
132
C
C
150
T
A
162
G
A
168
G
G
177
T
A
189
G
G
195
T
T
198
C
G
199
A
T
207
C
Show more
Deletions
2930, 3006, 4684-4722, 6025-6027, 6091, 6109, 6110, 6196, 6210-6215, 6853, 6921, 6922, 6975-6984, 7002-7014, 7144-7147, 13188
Insertions
ins_2981:C, ins_5813:AGA, ins_6687:A, ins_6711:CA, ins_6759:GCAACC, ins_7065:TT, ins_7080:T
Amino acid substitutions
Substitutions called relative to the
NC_039199.1
reference
Substitutions
F
F:
V
6
M
F:
F
9
I
F:
L
36
H
F:
A
61
T
F:
R
82
K
F:
V
122
I
F:
T
135
N
F:
N
139
G
F:
K
143
T
F:
D
167
E
F:
R
175
S
F:
T
223
N
F:
N
233
Y
F:
F
258
I
F:
D
280
N
F:
V
286
I
F:
G
294
E
F:
K
296
D
Show more
G
G:
K
4
R
G:
T
10
A
G:
L
14
F
G:
R
17
K
G:
V
18
M
G:
V
22
I
G:
A
23
R
G:
R
24
S
G:
F
28
Y
G:
K
29
R
G:
S
32
T
G:
V
34
I
G:
I
38
L
G:
T
40
A
G:
I
43
M
G:
Y
48
F
G:
N
52
D
G:
K
54
A
Show more
L
L:
L
4
F
L:
N
5
C
L:
N
42
K
L:
N
65
I
L:
S
66
T
L:
I
75
V
L:
V
79
I
L:
V
89
T
L:
T
109
S
L:
N
113
S
L:
S
123
T
L:
D
127
N
L:
S
132
N
L:
S
141
V
L:
K
162
R
L:
V
182
I
L:
I
189
V
L:
V
198
I
Show more
M
M:
I
23
V
M:
E
103
D
M:
E
111
D
M:
T
156
I
M:
K
237
R
M:
T
241
S
M2-1
M2-1:
K
4
R
M2-1:
I
37
L
M2-1:
R
52
K
M2-1:
S
88
G
M2-1:
V
108
I
M2-1:
S
121
N
M2-1:
V
130
I
M2-1:
R
149
K
M2-1:
K
160
R
M2-1:
A
169
T
M2-1:
E
170
D
M2-2
M2-2:
E
18
K
M2-2:
V
22
K
M2-2:
V
28
A
M2-2:
M
31
I
M2-2:
D
37
E
M2-2:
A
41
T
M2-2:
N
55
S
N
N:
A
54
T
N:
A
57
T
N:
S
71
C
N:
R
96
K
N:
I
103
G
N:
N
106
S
N:
D
110
E
N:
A
136
V
N:
M
201
I
N:
D
212
E
N:
H
220
Y
N:
K
356
R
N:
V
385
M
N:
S
389
N
N:
N
391
D
P
P:
L
19
I
P:
R
28
K
P:
K
29
R
P:
P
30
S
P:
S
35
T
P:
I
39
V
P:
N
44
T
P:
V
46
I
P:
R
57
K
P:
K
60
R
P:
P
61
S
P:
T
62
S
P:
I
63
T
P:
S
65
L
P:
T
72
A
P:
K
74
S
P:
G
75
S
P:
E
81
T
Show more
SH
SH:
I
2
K
SH:
I
7
V
SH:
T
17
N
SH:
H
18
Q
SH:
L
19
I
SH:
I
22
L
SH:
D
25
N
SH:
V
30
L
SH:
V
33
A
SH:
L
44
F
SH:
I
50
V
SH:
I
61
A
SH:
S
64
L
SH:
T
66
N
SH:
S
73
T
SH:
S
74
K
SH:
S
75
L
SH:
V
80
T
Show more
Deletions
G
G:203, G:226
Insertions
G
ins_G:137:R, ins_G:187:A
SH
ins_SH:108:R
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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