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PPD_00DQPUU.1

South_Africa/PPD_00DQPUU.1/2025-10-06
J. Maritz, D. Goedhals, J. Pekeur, T. Maponga, M. Claassen, T. Stander, G. van Zyl, W. Preiser, L. M. Hofstra, L. Chabuka, K. W. Liedeman, S. De Villiers, V. Wentzel, L. Singh, T. Ramakutoane, H. Tegally, E. Wilkinson & T. de Oliveira

S, Cape Town, Western Cape

Sample details

Collection date
2025-10-06
Sampling location
South Africa (Western Cape; Cape Town; Cape Town)
Isolate name
hMPV/A/SouthAfrica/PATH-CERI-C071100/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:08insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A2.2.2

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-02-17
NCBI update date
2026-02-18

Host

Host

Submission details

Submission ID
OZ412858.1
Submitting group
Date submitted
2026-04-15 08:07:28 UTC
Date released
2026-04-15 09:02:33 UTC
Earliest release date
2026-02-17

Alignment and QC

Length
13304 (97.3%)
# of SNPs
1007
# of inserted bases
8
# of deleted bases
29
# of unknown bases
333
# of frame shifts
1
Frame shifts
G:59-237(nt:6421-6957)

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • G11A
  • A12G
  • C15A
  • T24C
  • A51G
  • T70C
  • A117G
  • G126A
  • T129C
  • T138A
  • G180A
  • G195A
  • A204G
  • G208A
  • C213T
  • T249C
  • T259C
  • A264G
Deletions

4692-4719, 6224
Insertions

ins_6118:A, ins_6420:T, ins_13280:TTAAAA

Amino acid substitutions

Substitutions called relative to the NC_039199.1 reference

Substitutions

F

  • F:R82K
  • F:A185D
  • F:F258I
  • F:I285V
  • F:G294E
  • F:S466N
  • F:T504S
  • F:V510I
  • F:K518R
  • F:N539S

G

  • G:T10A
  • G:K29R
  • G:V34I
  • G:T40A
  • G:L41M
  • G:K54T
  • G:M55I

L

  • L:I75V
  • L:D126G
  • L:S132G
  • L:K162R
  • L:V182I
  • L:I245M
  • L:W390L
  • L:K496T
  • L:T505A
  • L:K513N
  • L:K530R
  • L:K538R
  • L:D546E
  • L:S769R
  • L:S895T
  • L:R951K
  • L:A954T
  • L:R957K

M

  • M:I23V
  • M:N66S
  • M:K87R

M2-1

  • M2-1:V130I
  • M2-1:E170D

M2-2

  • M2-2:H35Q
  • M2-2:D37E

N

  • N:A57T
  • N:V92A
  • N:I103V
  • N:H220Y
  • N:V385A

P

  • P:G31S
  • P:N44S
  • P:A59T
  • P:P61S
  • P:T78N
  • P:K79R
  • P:I82A
  • P:A85T
  • P:V88I
  • P:V214I
  • P:K227R
  • P:S239N
  • P:S242T
  • P:T280L
  • P:S284N

SH

  • SH:S9N
  • SH:V33A
  • SH:L44F
  • SH:S68T
  • SH:K71E
  • SH:S74P
  • SH:N87D
  • SH:S96R
  • SH:N103D
  • SH:A105V
  • SH:S108K
  • SH:N115S
  • SH:S132P
  • SH:T135S
  • SH:T137I
  • SH:N139S
  • SH:K142R
  • SH:P151S
Deletions
N/A
Insertions
N/A

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