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PPD_00DE5T1.1

Democratic_Republic_of_the_Congo/PPD_00DE5T1.1/2020-06-12
E. Kinganda-Lusamaki, S. Whitmer, E. Lokilo-Lofiko, A. Amuri-Aziza, F. Muyembe-Mawete, J. C. Makangara-Cigolo, G. Makaya, F. Mbuyi, A. Whitesell, R. Kallay, M. Choi, C. Pratt, D. Mukadi-Bamuleka, H. Kavunga-Membo, M. Matondo-Kuamfumu, F. Mambu-Mbika, R. Ekila-Ifinji, T. Shoemaker, M. Stewart, J. Eng, A. Rajan, G. N. Soke, P. N. Fonjungo, J. O. Otshudiema, ..., P. Mbala

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
2020-06-12
Sampling location
Democratic Republic of the Congo
Isolate name
Ebolavirus/H.sapiens-wt/COD/2020/Tumba-RDCEQT000151

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:07insdc_ingest_userOPEN
Data use terms URL

Outbreak

Outbreak
Ebov-2018a/r2020

INSDC

INSDC accession
NCBI release date
2024-03-11
NCBI update date
2024-03-11

Host

Host

Submission details

Submission ID
OR084846.1
Submitting group
Date submitted
2026-04-15 08:06:32 UTC
Date released
2026-04-15 08:42:22 UTC
Earliest release date
2024-03-11

Alignment and QC

Length
18810 (95.6%)
# of SNPs
249
# of inserted bases
2
# of unknown bases
682

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • C180T
  • G181A
  • A187G
  • C230T
  • G381A
  • A388G
  • G413A
  • T463C
  • A491G
  • G500A
  • T542C
  • A619G
  • A622G
  • C646T
  • T763C
  • C1094T
  • T1156C
  • C1198T
Deletions
N/A
Insertions

ins_2819:T, ins_18619:T

Amino acid substitutions

Substitutions called relative to the NC_002549.1 reference

Substitutions

GP

  • GP:P126L
  • GP:V310A
  • GP:D338G
  • GP:S377P
  • GP:L378P
  • GP:A417T
  • GP:S422P
  • GP:T424M
  • GP:P430L
  • GP:S440G
  • GP:F443L
  • GP:A474T
  • GP:I544T

L

  • L:V79I
  • L:E130D
  • L:L287F
  • L:P507L
  • L:I1183L
  • L:S1383N
  • L:R1405Q
  • L:F1610L
  • L:I1704T
  • L:F1742S
  • L:H1745Y
  • L:I1757T
  • L:D1888N
  • L:C2050Y
  • L:E2051D

NP

  • NP:I8V
  • NP:A11T
  • NP:S598P
  • NP:S644P

VP24

  • VP24:A99V
  • VP24:M212K

VP30

  • VP30:A131V

VP35

  • VP35:N204D

sGP

  • sGP:P126L
  • sGP:T338A

ssGP

  • ssGP:P126L
Deletions
N/A
Insertions
N/A

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