This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00DE3S5.1

Guinea/PPD_00DE3S5.1/2021-02-12
A. K. Keita, F. R. Koundouno, M. Faye, A. Dux, J. Hinzmann, H. Diallo, A. Ayouba, F. Le Marcis, B. Soropogui, K. Ifono, M. M. Diagne, M. S. Sow, J. A. Bore, S. Calvignac-Spencer, N. Vidal, J. Camara, M. B. Keita, A. Renevey, A. Diallo, A. K. Soumah, S. L. Millimono, A. Mari-Saez, M. Diop, A. Dore, ..., S. Guenther

Bernhard Nocht Institute for Tropical Medicine, Virology dpt.

Sample details

Collection date
2021-02-12
Sampling location
Guinea (Nzerekore)
Isolate name
Ebola virus/H.sapiens-wt/GIN/2021/Makona-G0002

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:07insdc_ingest_userOPEN
Data use terms URL

Outbreak

Outbreak
Ebov-2013/r2021

INSDC

INSDC accession
NCBI release date
2021-06-28
NCBI update date
2021-10-01

Host

Host

Submission details

Submission ID
MZ424849.1
Submitting group
Date submitted
2026-04-15 08:06:32 UTC
Date released
2026-04-15 08:42:22 UTC
Earliest release date
2021-06-28

Alignment and QC

Length
17594 (67.7%)
# of SNPs
349
# of unknown bases
4752

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • A619G
  • A655T
  • G721A
  • C800T
  • A850G
  • A852G
  • A895G
  • T919C
  • C1094T
  • C1108T
  • G1141A
  • C1198T
  • T1199C
  • T1309C
  • A1417G
  • A1447C
  • T1456C
  • A1495G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_002549.1 reference

Substitutions

GP

  • GP:A82V
  • GP:T262A
  • GP:V310A
  • GP:A315P
  • GP:G331E
  • GP:T336N
  • GP:E359K
  • GP:S377P
  • GP:L378P
  • GP:P382T
  • GP:E405G
  • GP:T411A
  • GP:S422P
  • GP:P430L
  • GP:T441A
  • GP:F443S
  • GP:P446L
  • GP:H455Y

L

  • L:E130D
  • L:F150L
  • L:M197L
  • L:A215T
  • L:I259V
  • L:M337I
  • L:Q346H
  • L:L888S
  • L:F1142V
  • L:I1240T
  • L:Y1594H
  • L:Q1607H
  • L:S1615N
  • L:S1645N
  • L:Y1654D
  • L:A1656T
  • L:D1658N
  • L:F1742S

NP

  • NP:R111C
  • NP:K128R
  • NP:S465G
  • NP:N478S
  • NP:I517T
  • NP:R525T
  • NP:I527T
  • NP:P531T
  • NP:H534R
  • NP:T631I
  • NP:Q637R
  • NP:S644P
  • NP:E708D
  • NP:K728R

VP35

  • VP35:A12V
  • VP35:S41N
  • VP35:T68M
  • VP35:N204D

sGP

  • sGP:A82V
  • sGP:T262A
  • sGP:E314D
  • sGP:G331R
  • sGP:L336M

ssGP

  • ssGP:A82V
  • ssGP:T262A
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue