This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00D925R.1

Japan/PPD_00D925R.1/2025-04-26
K. Kuroki & R. Kumagai

Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

Sample details

Collection date
2025-04-26
Sampling location
Japan (Tokyo)
Isolate name
hMPV_A2b2/N/F25-107/Tokyo/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:07insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A2.2.2

INSDC

INSDC accession
NCBI release date
2025-07-04
NCBI update date
2025-07-05

Host

Host

Submission details

Submission ID
LC880197.1
Submitting group
Date submitted
2026-04-15 08:06:42 UTC
Date released
2026-04-15 08:32:18 UTC
Earliest release date
2025-07-04

Alignment and QC

Length
996 (8.16%)
# of SNPs
106
# of inserted bases
11
# of deleted bases
104
# of frame shifts
3
Frame shifts
N:147-235(nt:477-744),N:243-269(nt:766-846),N:275-287(nt:862-900)

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • G126A
  • T129C
  • T138A
  • G180A
  • G195A
  • A204G
  • G208A
  • C213T
  • T249C
  • T259C
  • A264G
  • G276A
  • T285C
  • G288A
  • G291A
  • C309T
  • T314C
  • C318T
Deletions

475, 476, 652-654, 666-676, 685-724, 847, 848, 877-881, 901-941
Insertions

ins_744:CT, ins_765:ATTCGTTA, ins_861:G

Amino acid substitutions

Substitutions called relative to the NC_039199.1 reference

Substitutions

N

  • N:A57T
  • N:V92A
  • N:I103V
  • N:S238K
  • N:K239Q
  • N:L273N
  • N:G274M
Deletions

N

N:146, N:270, N:288-302
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue