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PPD_00D08N2.1

Uganda/PPD_00D08N2.1/2025-01-19
S. Nabadda, I. Sewanyana, H. Kyobe Bosa, M. Wayengera, S. K. Tessema, D. Ssemwanga, P. van Heusden, A. Christoffels, G. Mboowa, D. J. Park, H. Onywera, C. K. Tanui, S. W. Mwangi, S. Balinandi, T. Andrew, J. Sseruyange, H. R. Oundo, W. Tenywa, G. T. Wenka, M. Murungi, J. M. Kabahita, V. Nakintu, C. Makoha, A. Ssemaganda, S. Kanyerezi & A. Ayitewala

The Central Public Health Laboratories, Kampala

Sample details

Collection date
2025-01-19
Sampling location
Uganda (Kampala)

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:06insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-02-05
NCBI update date
2025-02-06

Host

Host

Submission details

Submission ID
OZ222062.1
Submitting group
Date submitted
2026-04-15 08:06:41 UTC
Date released
2026-04-15 08:12:04 UTC
Earliest release date
2025-02-05

Alignment and QC

Length
18225 (96.6%)
# of SNPs
171

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • A134C
  • A135G
  • A337G
  • C354T
  • T895C
  • A1126C
  • C1321T
  • G1450T
  • C1646T
  • T1885C
  • C1893T
  • A1978G
  • C2247T
  • T2356C
  • G2390A
  • C2452T
  • C2618T
  • T2662A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_006432.1 reference

Substitutions

GP

  • GP:S17N
  • GP:P411L
  • GP:T417M
  • GP:P419L
  • GP:T442A
  • GP:P451S

L

  • L:K43R
  • L:N120S
  • L:I954V
  • L:D1383E
  • L:S1585P
  • L:T1704P
  • L:A1748V
  • L:V1760I
  • L:P1877S
  • L:V1889I

NP

  • NP:T479I
  • NP:S597L
  • NP:G645R
  • NP:L721F

VP30

  • VP30:V71I

VP35

  • VP35:V185I
  • VP35:I190T

VP40

  • VP40:M276I

sGP

  • sGP:S17N

ssGP

  • ssGP:S17N
Deletions
N/A
Insertions
N/A

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