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PPD_00D0390.1
Download
Download FASTA
Download metadata TSV
Rwanda/PPD_00D0390.1/2024-09-30
C. M. Muvunyi,
Y. Butera,
L. Mutesa,
C. Happi,
R. Muvunyi,
J. P. Musabyimana,
E. Parker,
E. Umumararungu,
N. Gahima &
J. Rwabuhihi
Rwanda Biomedical Centre, Director General
Sample details
Collection date
2024-09-30
Sampling location
Rwanda
Isolate name
MARV_RW_OCT_2024_C034_2024_09_30
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-15 08:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
MARV.B.2
INSDC
INSDC accession
PQ552739.1
NCBI release date
2024-11-06
NCBI update date
2024-11-06
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PQ552739.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-15 08:06:18 UTC
Date released
2026-04-15 08:10:04 UTC
Earliest release date
2024-11-06
Alignment and QC
Length
18293 (74.5%)
# of SNPs
805
# of inserted bases
1
# of unknown bases
4059
# of frame shifts
1
Frame shifts
L:2333(nt:18476)
Nucleotide mutations
Mutations called relative to the
NC_001608.3
reference
Substitutions
G
310
A
G
340
A
C
343
T
T
367
C
T
415
C
C
433
T
G
460
A
T
499
C
A
502
G
C
520
T
A
547
G
G
583
A
G
595
A
G
598
A
C
601
T
T
619
C
C
628
T
C
634
T
Show more
Deletions
N/A
Insertions
ins_18475:N
Amino acid substitutions
Substitutions called relative to the
NC_001608.3
reference
Substitutions
GP
GP:
T
16
I
GP:
N
18
T
GP:
N
28
D
GP:
I
113
V
GP:
A
214
T
GP:
A
227
T
GP:
A
267
T
GP:
R
276
Q
GP:
H
279
D
GP:
S
303
G
GP:
V
319
A
GP:
P
418
S
GP:
P
419
S
GP:
S
422
N
GP:
A
425
T
GP:
V
429
I
GP:
V
547
G
GP:
K
618
R
L
L:
I
17
V
L:
A
115
T
L:
S
128
P
L:
V
189
I
L:
I
214
V
L:
Q
282
Y
L:
H
335
C
L:
Q
342
R
L:
V
359
I
L:
S
398
A
L:
E
536
D
L:
D
653
N
L:
E
947
G
L:
S
957
A
L:
E
1143
K
L:
S
1161
P
L:
D
1162
E
L:
K
1164
E
Show more
NP
NP:
M
428
V
NP:
E
448
G
NP:
G
481
S
NP:
P
493
S
NP:
R
495
G
NP:
N
501
D
NP:
N
578
S
NP:
P
579
S
NP:
M
612
A
NP:
D
625
Y
NP:
N
654
S
NP:
I
660
V
VP24
VP24:
N
17
K
VP24:
H
48
R
VP24:
V
214
I
VP30
VP30:
P
90
L
VP30:
S
159
N
VP30:
M
201
I
VP35
VP35:
R
70
K
VP35:
T
94
V
VP35:
R
285
K
VP40
VP40:
Q
37
H
VP40:
V
57
I
VP40:
Q
159
R
VP40:
V
195
I
VP40:
N
269
S
VP40:
N
284
H
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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