This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
Organisms
Marburg Virus
SeqSets
News
About
Docs
Login
Pathoplexus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
Dengue Virus
Ebola Sudan
Ebola Zaire
HMPV
Marburg Virus
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Yellow Fever Virus
SeqSets
News
About
Docs
Login
API docs
Governance
Legal notice
Funding
Contact
Status
Marburg Virus
|
Browse data
Submit sequences
Tools
Select organism section
Browse data
Submit sequences
Tools
PPD_00D030J.1
Download
Download FASTA
Download metadata TSV
Rwanda/PPD_00D030J.1/2024-09-25
C. M. Muvunyi,
Y. Butera,
L. Mutesa,
C. Happi,
R. Muvunyi,
J. P. Musabyimana,
E. Parker,
E. Umumararungu,
N. Gahima &
J. Rwabuhihi
Rwanda Biomedical Centre, Director General
Sample details
Collection date
2024-09-25
Sampling location
Rwanda
Isolate name
MARV_RW_OCT_2024_C002_2024_09_25
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-15 08:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
MARV.B.2
INSDC
INSDC accession
PQ552730.1
NCBI release date
2024-11-06
NCBI update date
2024-11-06
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PQ552730.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-15 08:06:18 UTC
Date released
2026-04-15 08:10:04 UTC
Earliest release date
2024-11-06
Alignment and QC
Length
18451 (88.1%)
# of SNPs
1095
# of inserted bases
1
# of unknown bases
1619
# of frame shifts
1
Frame shifts
L:2333(nt:18476)
Nucleotide mutations
Mutations called relative to the
NC_001608.3
reference
Substitutions
C
142
T
A
169
G
C
205
T
C
256
T
G
265
A
G
277
T
G
289
A
G
310
A
G
340
A
C
343
T
T
367
C
T
415
C
C
433
T
G
460
A
T
499
C
A
502
G
C
520
T
A
547
G
Show more
Deletions
N/A
Insertions
ins_18475:N
Amino acid substitutions
Substitutions called relative to the
NC_001608.3
reference
Substitutions
GP
GP:
K
2
R
GP:
L
7
F
GP:
T
16
I
GP:
N
18
T
GP:
N
28
D
GP:
I
113
V
GP:
A
214
T
GP:
A
227
T
GP:
I
231
T
GP:
P
234
S
GP:
L
235
P
GP:
R
239
H
GP:
D
258
N
GP:
S
260
N
GP:
A
267
T
GP:
R
276
Q
GP:
H
279
D
GP:
S
303
G
Show more
L
L:
I
17
V
L:
A
115
T
L:
S
128
P
L:
V
189
I
L:
I
214
V
L:
Q
282
Y
L:
H
335
C
L:
Q
342
R
L:
V
359
I
L:
S
398
A
L:
E
536
D
L:
D
653
N
L:
E
947
G
L:
S
957
A
L:
K
981
R
L:
E
1143
K
L:
S
1161
P
L:
D
1162
E
Show more
NP
NP:
M
428
V
NP:
E
448
G
NP:
G
481
S
NP:
P
493
S
NP:
R
495
G
NP:
N
501
D
NP:
N
578
S
NP:
P
579
S
NP:
M
612
A
NP:
D
625
Y
NP:
N
654
S
NP:
I
660
V
VP24
VP24:
N
17
K
VP24:
H
48
R
VP24:
V
214
I
VP30
VP30:
V
15
A
VP30:
T
16
I
VP30:
T
18
S
VP30:
H
30
N
VP30:
Y
34
H
VP30:
A
48
T
VP30:
A
88
T
VP30:
P
90
L
VP30:
T
121
A
VP30:
R
123
K
VP30:
S
159
N
VP30:
M
201
I
VP35
VP35:
R
70
K
VP35:
T
94
V
VP35:
R
285
K
VP40
VP40:
Q
37
H
VP40:
V
57
I
VP40:
Q
159
R
VP40:
V
195
I
VP40:
N
269
S
VP40:
N
284
H
VP40:
V
303
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue