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PPD_00D02Q4.1

Ghana/PPD_00D02Q4.1/2022-07-13
J. H. K. Bonney, B. Adu, T. Sanders, D. Pratt, P. Adams, I. A. Asante, E. Y. Bonney, B. Agbodzi, S. Kumordjie, E. Obodai, P. Ketorwoley, C. Yeboah, M. Tublu, M. Ofori, D. Laryea, F. Asiedu-Bekoe, G. B. Kyei, S.-A. Ohene, G. Boateng, R. Chapman, O. Faye, M. R. Wiley, A. Sall, J. K. Odoom, F. Kasolo & D. Yeboah-Manu

University of Ghana Noguchi Memorial Institute for Medical Research, NAMRU-3

Sample details

Collection date
2022-07-13
Sampling location
Ghana (Sawla)
Isolate name
MV-22-106/Ghana/2022

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:06insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
MARV.A.3

INSDC

INSDC accession
NCBI release date
2023-07-26
NCBI update date
2023-07-26

Host

Host

Submission details

Submission ID
OQ672470.1
Submitting group
Date submitted
2026-04-15 08:06:18 UTC
Date released
2026-04-15 08:10:04 UTC
Earliest release date
2023-07-26

Alignment and QC

Length
18885 (98.4%)
# of SNPs
1392
# of inserted bases
2
# of unknown bases
77

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • C115T
  • G124A
  • C142T
  • C148T
  • A169G
  • T181C
  • T253C
  • C256T
  • C257T
  • G280A
  • G289A
  • T292C
  • T304C
  • T307C
  • G310A
  • G337A
  • A339G
  • G340A
Deletions
N/A
Insertions

ins_18681:G, ins_18825:T

Amino acid substitutions

Substitutions called relative to the NC_001608.3 reference

Substitutions

GP

  • GP:F6L
  • GP:L10I
  • GP:T16V
  • GP:N18T
  • GP:N28I
  • GP:A214I
  • GP:S229P
  • GP:I231K
  • GP:P233S
  • GP:R239H
  • GP:I242V
  • GP:P248S
  • GP:K253E
  • GP:P259T
  • GP:S260N
  • GP:A267T
  • GP:R276Q
  • GP:H279Y

L

  • L:N42D
  • L:V70I
  • L:D124N
  • L:H125R
  • L:S128P
  • L:A129T
  • L:I214V
  • L:H335C
  • L:D336C
  • L:N346H
  • L:V359I
  • L:E536D
  • L:I757V
  • L:S957A
  • L:K981R
  • L:E1143K
  • L:K1164E
  • L:L1169V

NP

  • NP:K79R
  • NP:A209S
  • NP:A260T
  • NP:H342R
  • NP:M428I
  • NP:D440G
  • NP:G481S
  • NP:P491S
  • NP:P494T
  • NP:N501D
  • NP:P514L
  • NP:Q518P
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:A615V
  • NP:D625Y
  • NP:N628D
  • NP:I660M

VP24

  • VP24:A12V
  • VP24:T15P
  • VP24:N17K

VP30

  • VP30:V15A
  • VP30:T18S
  • VP30:Y34H
  • VP30:A88T
  • VP30:M201I

VP35

  • VP35:A27T
  • VP35:K69R
  • VP35:R70K
  • VP35:M180T

VP40

  • VP40:N56D
Deletions
N/A
Insertions
N/A

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