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PPD_00D02JG.1
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Download metadata TSV
Guinea/PPD_00D02JG.1/2021-08-09
M. Faye,
M. M. Diagne,
M. R. Wiley,
N. Magassouba,
O. Faye &
A. Sall
Institut Pasteur de Dakar, Virology Department
Sample details
Collection date
2021-08-09
Sampling location
Guinea
Isolate name
MARV001
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-15 08:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
MARV.A.3
INSDC
INSDC accession
OL702894.1
NCBI release date
2021-12-12
NCBI update date
2021-12-12
Host
Host
human (Homo sapiens)
Submission details
Submission ID
OL702894.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-15 08:06:18 UTC
Date released
2026-04-15 08:10:04 UTC
Earliest release date
2021-12-12
Alignment and QC
Length
19058 (99.7%)
# of SNPs
1405
# of inserted bases
2
Nucleotide mutations
Mutations called relative to the
NC_001608.3
reference
Substitutions
C
115
T
G
124
A
C
142
T
C
148
T
A
169
G
T
181
C
T
253
C
C
256
T
C
257
T
G
280
A
G
289
A
T
292
C
T
304
C
T
307
C
G
310
A
G
337
A
A
339
G
G
340
A
Show more
Deletions
N/A
Insertions
ins_18681:G, ins_18872:G
Amino acid substitutions
Substitutions called relative to the
NC_001608.3
reference
Substitutions
GP
GP:
F
6
L
GP:
L
10
I
GP:
T
16
V
GP:
N
18
T
GP:
N
28
I
GP:
A
214
I
GP:
S
229
P
GP:
I
231
K
GP:
P
233
S
GP:
R
239
H
GP:
I
242
V
GP:
P
248
S
GP:
K
253
E
GP:
P
259
T
GP:
S
260
N
GP:
A
267
T
GP:
R
276
Q
GP:
H
279
Y
Show more
L
L:
N
42
D
L:
V
70
I
L:
D
124
N
L:
H
125
R
L:
S
128
P
L:
A
129
T
L:
I
214
V
L:
H
335
C
L:
D
336
C
L:
N
346
H
L:
V
359
I
L:
E
536
D
L:
I
757
V
L:
S
957
A
L:
K
981
R
L:
E
1143
K
L:
K
1164
E
L:
L
1169
V
Show more
NP
NP:
K
79
R
NP:
A
260
T
NP:
H
342
R
NP:
M
428
I
NP:
D
440
G
NP:
G
481
S
NP:
P
491
S
NP:
N
501
D
NP:
P
514
L
NP:
Q
518
P
NP:
A
577
V
NP:
N
578
S
NP:
P
579
S
NP:
M
612
A
NP:
A
615
V
NP:
D
625
Y
NP:
N
628
D
NP:
I
660
M
VP24
VP24:
A
12
V
VP24:
T
15
P
VP24:
N
17
K
VP30
VP30:
V
15
A
VP30:
T
18
S
VP30:
Y
34
H
VP30:
A
88
T
VP30:
M
201
I
VP35
VP35:
A
27
T
VP35:
K
69
R
VP35:
R
70
K
VP35:
M
180
T
VP40
VP40:
V
44
M
VP40:
N
56
D
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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