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PPD_00D01YP.1

Sierra_Leone/PPD_00D01YP.1/2017-06-12
B. R. Amman, B. H. Bird, I. A. Bakarr, J. Bangura, A. J. Schuh, J. Johnny, T. K. Sealy, I. Conteh, A. H. Koroma, I. Foday, E. Amara, A. A. Bangura, A. A. Gbakima, A. Tremeau-Bravard, M. Belaganahalli, J. Dhanota, A. Chow, V. Ontiveros, A. Gibson, J. Turay, K. Patel, J. Graziano, C. Bangura, E. S. Kamanda, ..., R. Emeric

University of California, Davis, VM: One Health Institute

Sample details

Collection date
2017-06-12
Sampling location
Sierra Leone
Isolate name
PREDICT_SLAB3960 Kakbat_SL_2017

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:06insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
MARV.A.3

INSDC

INSDC accession
NCBI release date
2020-02-24
NCBI update date
2020-02-24

Host

Host

Submission details

Submission ID
MN258361.1
Submitting group
Date submitted
2026-04-15 08:06:18 UTC
Date released
2026-04-15 08:10:04 UTC
Earliest release date
2020-02-24

Alignment and QC

Length
19100 (99.9%)
# of SNPs
1353
# of inserted bases
3

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • G22C
  • A23T
  • A26T
  • C115T
  • G124A
  • C142T
  • C148T
  • A169G
  • T181C
  • C256T
  • G289A
  • T292C
  • C295T
  • T304C
  • T307C
  • G310A
  • T331C
  • G337A
Deletions
N/A
Insertions

ins_18681:G, ins_18872:G, ins_19111:A

Amino acid substitutions

Substitutions called relative to the NC_001608.3 reference

Substitutions

GP

  • GP:T4I
  • GP:C5W
  • GP:F6L
  • GP:T16V
  • GP:N18T
  • GP:A214T
  • GP:I231K
  • GP:P236S
  • GP:R239H
  • GP:I242V
  • GP:L244P
  • GP:P248S
  • GP:S260N
  • GP:A267T
  • GP:R276Q
  • GP:V285T
  • GP:L290P
  • GP:S291P

L

  • L:T56I
  • L:D124N
  • L:S128P
  • L:E136D
  • L:I214V
  • L:H335C
  • L:D336C
  • L:A348S
  • L:V359I
  • L:V447M
  • L:Q494R
  • L:E536D
  • L:I757V
  • L:S957A
  • L:K981R
  • L:R1082K
  • L:V1112I
  • L:E1143K

NP

  • NP:M428I
  • NP:H444R
  • NP:G481S
  • NP:N501D
  • NP:G505E
  • NP:P514L
  • NP:Q518P
  • NP:I572T
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:E608G
  • NP:M612A
  • NP:D625Y
  • NP:V664I

VP24

  • VP24:N17K

VP30

  • VP30:V15A
  • VP30:T18S
  • VP30:T32A
  • VP30:N33S
  • VP30:Y34H
  • VP30:A88T
  • VP30:M201I

VP35

  • VP35:A27T
  • VP35:R70K
  • VP35:N80S
  • VP35:S88G
  • VP35:M180T
Deletions
N/A
Insertions
N/A

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