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PPD_00D01BY.1

South_Africa/PPD_00D01BY.1/2013-07
J. T. Paweska, P. Jansen van Vuren, A. Kemp, N. Storm, A. A. Grobbelaar, M. R. Wiley, G. Palacios & W. Markotter

National Institute for Communicable Diseases, Centre for Emerging Zoonotic and Parasitic Diseases

Sample details

Collection date
2013-07
Sampling location
South Africa
Isolate name
SPU191-13_bat2764_Mahlapitsi

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-15 08:06insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
MARV.B

INSDC

INSDC accession
NCBI release date
2018-09-23
NCBI update date
2018-09-23

Host

Host

Submission details

Submission ID
MG725616.1
Submitting group
Date submitted
2026-04-15 08:06:18 UTC
Date released
2026-04-15 08:10:04 UTC
Earliest release date
2018-09-23

Alignment and QC

Length
19066 (97.5%)
# of SNPs
1335
# of inserted bases
2
# of unknown bases
422

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • T109C
  • C115T
  • G124A
  • C142T
  • A169G
  • C205T
  • G214A
  • C256T
  • G265A
  • G277T
  • G289A
  • G310A
  • G340A
  • C343T
  • A346G
  • T367C
  • T415C
  • G460A
Deletions
N/A
Insertions

ins_18683:A, ins_18872:G

Amino acid substitutions

Substitutions called relative to the NC_001608.3 reference

Substitutions

GP

  • GP:K2R
  • GP:F6L
  • GP:L7F
  • GP:T16I
  • GP:N18T
  • GP:N28D
  • GP:I113V
  • GP:A214T
  • GP:Q216H
  • GP:I231T
  • GP:L235P
  • GP:P236L
  • GP:R239H
  • GP:L244P
  • GP:K253R
  • GP:D258N
  • GP:S260N
  • GP:L266F

L

  • L:I17V
  • L:A115T
  • L:G122R
  • L:S128P
  • L:V189I
  • L:I214V
  • L:Q282Y
  • L:H335C
  • L:Q342R
  • L:V359I
  • L:S398A
  • L:R443K
  • L:E536D
  • L:D653N
  • L:E947G
  • L:S957A
  • L:K981R
  • L:R1018K

NP

  • NP:M428V
  • NP:G481S
  • NP:P493S
  • NP:R495G
  • NP:N501D
  • NP:A564T
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y
  • NP:N654S
  • NP:I660V

VP24

  • VP24:N17K
  • VP24:V214I

VP30

  • VP30:V15A
  • VP30:T16I
  • VP30:T18S
  • VP30:H30N
  • VP30:Y34H
  • VP30:A48T
  • VP30:A88T
  • VP30:P90L
  • VP30:T121V
  • VP30:R123K
  • VP30:S159N
  • VP30:M201I
  • VP30:G278S

VP35

  • VP35:R70K

VP40

  • VP40:Q37H
  • VP40:I187T
  • VP40:N269S
Deletions
N/A
Insertions
N/A

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