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Uganda/PPD_00CZZFU.1/2012
C. G. Albarino, T. Shoemaker, M. L. Khristova, J. F. Wamala, J. J. Muyembe, S. Balinandi, A. Tumusiime, S. Campbell, D. Cannon, A. Gibbons, E. Bergeron, B. Bird, K. Dodd, C. Spiropoulou, B. R. Erickson, L. Guerrero, B. Knust, S. T. Nichol, P. E. Rollin, U. Stroher & M. Khristova

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
2012
Sampling location
Uganda
Isolate name
Mbg-422-2012

Data use terms

Data use terms
OPEN

Clade

Clade
MARV.A.1

INSDC

INSDC accession
NCBI release date
2013-05-19
NCBI update date
2013-06-24

Submission details

Submission ID
KC545387.1
Date submitted
2026-04-15 08:06:18 UTC
Date released
2026-04-15 08:09:02 UTC
Earliest release date
2013-05-19

Alignment and QC

Length
19114 (100%)
# of SNPs
1173
# of inserted bases
3

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • A46G
  • G101A
  • C115T
  • T118C
  • G124A
  • A169G
  • C256T
  • G289A
  • T304C
  • G310A
  • G337A
  • A346G
  • A364G
  • C397T
  • C433T
  • C443T
  • A445G
  • A502G
Deletions
N/A
Insertions

ins_18681:G, ins_18877:A, ins_19111:A

Amino acid substitutions

Substitutions called relative to the NC_001608.3 reference

Substitutions

GP

  • GP:F6L
  • GP:L7F
  • GP:S9G
  • GP:G15R
  • GP:T16I
  • GP:N18T
  • GP:V33M
  • GP:K158R
  • GP:S201N
  • GP:P233S
  • GP:A238T
  • GP:P240S
  • GP:L244P
  • GP:K253A
  • GP:S260N
  • GP:A267T
  • GP:R276Q
  • GP:L290F

L

  • L:Y85H
  • L:S128P
  • L:A131T
  • L:V189I
  • L:I214V
  • L:H335C
  • L:D336S
  • L:L341F
  • L:D345G
  • L:V359I
  • L:T399V
  • L:R443K
  • L:E536D
  • L:N761D
  • L:N887S
  • L:S957A
  • L:K981R
  • L:E1143K

NP

  • NP:V334I
  • NP:R407Q
  • NP:M428I
  • NP:D440N
  • NP:G481S
  • NP:G489R
  • NP:A564T
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y

VP24

  • VP24:N17K
  • VP24:I190V

VP30

  • VP30:V15A
  • VP30:P17S
  • VP30:T18S
  • VP30:Y34H
  • VP30:S63P
  • VP30:A88T
  • VP30:P125L
  • VP30:S159N
  • VP30:M201I
  • VP30:I262T
  • VP30:S276N
  • VP30:G278S

VP35

  • VP35:I62V
  • VP35:R70K
  • VP35:S91N
  • VP35:A184E
Deletions
N/A
Insertions
N/A

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