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PPD_00CXPH3.1

USA/PPD_00CXPH3.1/2026-03-09
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-03-09
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVA-04244

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-31 03:55insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.5.2

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-03-30
NCBI update date
2026-03-30
Raw reads accession

Host

Host

Submission details

Submission ID
PZ191845.1
Submitting group
Date submitted
2026-03-31 03:55:06 UTC
Date released
2026-03-31 04:03:08 UTC
Earliest release date
2026-03-30

Alignment and QC

Length
14855 (91.9%)
# of SNPs
222
# of deleted bases
4
# of unknown bases
870

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • A135T
  • C183T
  • T246C
  • T364A
  • T697C
  • T922C
  • A940C
  • T1004C
  • A1009G
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • T1359C
  • G1368A
  • T1380C
  • T1422C
Deletions

4592, 7516-7518
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:A103T
  • F:T122A

G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:G98E
  • G:L101F
  • G:I134K
  • G:Q140R
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:E271G
  • G:S283P
  • G:D284G
  • G:P300S

L

  • L:N37D
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:Q831K
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:T1942I
  • L:V1943D

M

  • M:M73L

M2-1

  • M2-1:S176P

M2-2

  • M2-2:S44N
  • M2-2:H73Y

N

  • N:V352A

NS1

  • NS1:S99T

P

  • P:L55P
  • P:T69I
  • P:E239D
Deletions
N/A
Insertions
N/A

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