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PPD_00CWM7U.1

Italy/PPD_00CWM7U.1/2025-08
M. Viscardi, L. Cozzolino, L. Cardillo, G. Picazio, A. Pucciarelli, S. Cavaliere, C. De Martinis, G. Fusco & G. Galiero

Istituto Zooprofilattico Sperimentale del Mezzogiorno, Hanimal Health

Sample details

Collection date
2025-08
Sampling location
Italy
Isolate name
IZSM_WND2025_RD72891_ghiandaia_B

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 03:34insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
2

INSDC

INSDC accession
NCBI release date
2026-03-22
NCBI update date
2026-03-22

Host

Host

Submission details

Submission ID
PZ143796.1
Submitting group
Date submitted
2026-03-23 03:34:13 UTC
Date released
2026-03-23 03:43:16 UTC
Earliest release date
2026-03-22

Alignment and QC

Length
10997 (93.7%)
# of SNPs
2073
# of inserted bases
43
# of deleted bases
22
# of ambiguous bases
4
# of unknown bases
640
# of frame shifts
1
Frame shifts
NS4B:20-25(nt:6973-6990)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C123T
  • G126A
  • G128A
  • A156T
  • T167G
  • G168A
  • T180A
  • T199C
  • C204T
  • C210T
  • C216G
  • G219A
  • G222C
  • A231T
  • T234C
  • C246T
  • C255T
  • G261A
Deletions

6991-6998, 10467-10470, 10487-10494, 10904, 10921
Insertions

ins_6972:AAGCC, ins_7006:TTGAGA, ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTTA, ins_10462:ATAGC, ins_10483:GAT, ins_10501:T

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:M15L

NS1

  • NS1:S9G
  • NS1:Y34F
  • NS1:K44R
  • NS1:K51A
  • NS1:V71I
  • NS1:E94N
  • NS1:S99A
  • NS1:T105A
  • NS1:I113M
  • NS1:L123I
  • NS1:V135I
  • NS1:K141E
  • NS1:Q146A
  • NS1:L153M
  • NS1:K170R
  • NS1:V171I
  • NS1:S174T
  • NS1:L192M

NS2A

  • NS2A:M34I
  • NS2A:L38M
  • NS2A:I39L
  • NS2A:S68A
  • NS2A:M90L
  • NS2A:N104S
  • NS2A:V112A
  • NS2A:H119Y
  • NS2A:R122K
  • NS2A:Q123N
  • NS2A:I124V
  • NS2A:L126S
  • NS2A:I129V
  • NS2A:A137S
  • NS2A:R167K
  • NS2A:I183V
  • NS2A:R188K
  • NS2A:A193S

NS2B

  • NS2B:A41V
  • NS2B:S61T

NS3

  • NS3:K11R
  • NS3:Q92H
  • NS3:F130Y
  • NS3:D172E
  • NS3:I175A
  • NS3:R203K
  • NS3:R215K
  • NS3:A233S
  • NS3:N253S
  • NS3:V283I
  • NS3:S302A
  • NS3:S331A
  • NS3:L336M
  • NS3:S347T
  • NS3:T356V
  • NS3:V384I
  • NS3:T436E
  • NS3:E439D

NS4A

  • NS4A:T64S
  • NS4A:M65L
  • NS4A:A85V
  • NS4A:V86I
  • NS4A:V89A

NS4B

  • NS4B:S11N
  • NS4B:S14G
  • NS4B:F17L
  • NS4B:Q19H
  • NS4B:M29G
  • NS4B:G30V
  • NS4B:T48A
  • NS4B:T116A
  • NS4B:I168V
  • NS4B:L183M
  • NS4B:K193R
  • NS4B:I202T

NS5

  • NS5:Q18H
  • NS5:I33T
  • NS5:K45R
  • NS5:V49I
  • NS5:I78V
  • NS5:R101K
  • NS5:C139A
  • NS5:C140S
  • NS5:I162V
  • NS5:R177K
  • NS5:V181I
  • NS5:K190R
  • NS5:L197T
  • NS5:R224H
  • NS5:V229I
  • NS5:R247K
  • NS5:Y254F
  • NS5:R287K

capsid

  • capsid:S11N
  • capsid:V24G
  • capsid:S100T
  • capsid:K108T
  • capsid:T109A
  • capsid:I111F
  • capsid:A112T
  • capsid:V113I
  • capsid:M114L
  • capsid:I115L
  • capsid:S120C
  • capsid:V121A

env

  • env:E55D
  • env:T64S
  • env:K71R
  • env:D83E
  • env:R93K
  • env:S122T
  • env:I126T
  • env:R128W
  • env:T129I
  • env:L131Q
  • env:V159T
  • env:L167F
  • env:A172S
  • env:N199S
  • env:T205S
  • env:T208A
  • env:T210S
  • env:V232T

prM

  • prM:M44L
  • prM:D46E
  • prM:S57A
  • prM:A73S
  • prM:M112L
  • prM:R119I
  • prM:V156A
  • prM:V157I
Deletions

NS4B

NS4B:26-28
Insertions

NS4B

ins_NS4B:31:N

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