This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00CWG9V.1

USA/PPD_00CWG9V.1/2026-02-17
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-02-17
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVB-03681

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-19 03:54insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-03-18
NCBI update date
2026-03-18
Raw reads accession

Host

Host

Submission details

Submission ID
PZ135915.1
Submitting group
Date submitted
2026-03-19 03:54:28 UTC
Date released
2026-03-19 04:01:07 UTC
Earliest release date
2026-03-18

Alignment and QC

Length
15140 (92.7%)
# of SNPs
140
# of inserted bases
4
# of deleted bases
2
# of unknown bases
1026

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • T144C
  • G513T
  • G579A
  • C998A
  • C1231T
  • G1385A
  • G1732A
  • T1846C
  • A1900G
  • A2059G
  • C2074T
  • C2198T
  • G2504A
  • C2554T
  • A2649G
  • C2673T
  • C2691T
  • G3036C
Deletions

973, 4586
Insertions

ins_15093:TATA

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:T14I
  • F:Y117C
  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:T70A
  • G:A74V
  • G:I87T
  • G:E97D
  • G:S100G
  • G:P214S
  • G:P221L
  • G:P235S
  • G:D251Y
  • G:I252T
  • G:K256N
  • G:I268T

L

  • L:S173L
  • L:K570R
  • L:F1731L
  • L:T1755A
  • L:R1759K
  • L:T1987I
  • L:I2037V

M2-2

  • M2-2:I2T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:Y30H

P

  • P:S67N

SH

  • SH:I49T
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue