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PPD_00CVEDR.1
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Download FASTA
Download metadata TSV
DENV-3/USA/PPD_00CVEDR.1/2026-01-06
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Sample details
Collection date
2026-01-06
Sampling location
USA (California)
Isolate name
hDenV3/USA/CA-LACPHL-DA00084/2026
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-12 11:21
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession
PZ005896.1
NCBI release date
2026-02-18
NCBI update date
2026-02-18
Host
Host
9606
Host name - scientific
Homo sapiens
Submission details
Submission ID
PZ005896.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-12 11:19:33 UTC
Date released
2026-03-12 12:04:00 UTC
Earliest release date
2026-02-18
Lineage & Serotype
Lineage
3III_B.3.2
Serotype
DENV-3
Alignment and QC
Length
10603 (99%)
# of SNPs
455
# of inserted bases
3
# of deleted bases
2
# of ambiguous bases
1
# of unknown bases
2
Nucleotide mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
G
65
A
C
203
T
T
235
C
T
250
C
C
256
T
T
262
C
A
265
G
C
289
T
T
295
C
G
322
T
C
334
T
C
358
T
C
383
A
A
451
G
C
469
G
T
496
G
T
556
C
G
565
A
Show more
Deletions
74, 75
Insertions
ins_10437:ACC
Amino acid mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
2K
2K:
L
17
M
2K:
T
20
I
C
C:
Q
97
K
E
E:
V
158
I
E:
A
219
T
E:
I
380
T
E:
E
404
A
NS1
NS1:
I
71
V
NS1:
L
94
I
NS1:
L
178
M
NS1:
T
233
S
NS1:
S
290
N
NS2A
NS2A:
L
23
M
NS2A:
F
38
L
NS2A:
V
127
I
NS2A:
V
150
I
NS2A:
M
186
L
NS2B
NS2B:
P
57
A
NS3
NS3:
F
31
L
NS3:
E
43
D
NS3:
T
112
M
NS3:
T
176
M
NS3:
D
392
E
NS4A
NS4A:
D
36
H
NS4A:
V
100
I
NS4B
NS4B:
I
115
V
NS4B:
M
151
I
NS4B:
S
157
P
NS4B:
F
160
Y
NS4B:
K
241
R
NS5
NS5:
V
72
I
NS5:
T
188
A
NS5:
V
234
I
NS5:
A
372
V
NS5:
E
429
D
NS5:
I
553
T
NS5:
Q
562
L
NS5:
L
603
V
NS5:
T
629
S
NS5:
L
639
P
NS5:
E
820
D
NS5:
V
830
I
NS5:
P
864
S
prM
prM:
T
5
S
prM:
G
7
D
prM:
H
11
R
prM:
S
15
G
prM:
Q
17
N
prM:
S
28
A
prM:
A
29
S
prM:
V
31
I
prM:
L
44
M
prM:
E
46
D
prM:
M
49
V
prM:
R
55
H
prM:
T
59
V
prM:
D
62
E
prM:
V
64
I
prM:
A
70
L
prM:
E
72
S
prM:
S
81
N
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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