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PPD_00CVAET.1
Download
Download FASTA
Download metadata TSV
DENV-3/USA/PPD_00CVAET.1/2025-11-02
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Sample details
Collection date
2025-11-02
Sampling location
USA (California)
Isolate name
hDenV3/USA/CA-LACPHL-DA00082/2025
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-12 11:21
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession
PX754527.1
NCBI release date
2025-12-28
NCBI update date
2025-12-28
Host
Host
9606
Host name - scientific
Homo sapiens
Submission details
Submission ID
PX754527.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-12 11:19:33 UTC
Date released
2026-03-12 12:04:00 UTC
Earliest release date
2025-12-28
Lineage & Serotype
Lineage
3I_A.1
Serotype
DENV-3
Alignment and QC
Length
10551 (98.5%)
# of SNPs
805
# of ambiguous bases
1
Nucleotide mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
G
37
A
G
62
A
G
112
A
A
198
G
C
211
T
G
217
A
A
277
G
A
283
G
G
287
A
C
325
T
A
339
G
A
376
T
C
383
A
A
384
G
C
409
A
A
418
G
G
421
A
G
428
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
2K
2K:
T
20
I
2K:
I
21
V
C
C:
K
35
R
C:
V
65
I
C:
K
82
R
C:
Q
97
R
C:
I
108
M
C:
A
112
T
E
E:
I
68
V
E:
V
81
T
E:
P
124
L
E:
Y
132
H
E:
T
169
V
E:
N
201
D
E:
A
219
T
E:
R
231
K
E:
N
270
T
E:
T
301
S
E:
T
303
A
E:
V
322
I
E:
G
340
E
E:
P
362
L
E:
V
377
I
E:
N
383
K
E:
K
386
R
E:
E
404
A
E:
V
452
I
E:
A
479
V
NS1
NS1:
I
6
V
NS1:
T
93
I
NS1:
L
94
I
NS1:
S
145
N
NS1:
V
174
M
NS1:
T
233
S
NS1:
S
290
N
NS1:
S
339
N
NS2A
NS2A:
L
23
M
NS2A:
F
37
L
NS2A:
F
38
I
NS2A:
H
55
R
NS2A:
V
127
I
NS2A:
T
153
M
NS2A:
V
175
I
NS2A:
L
178
F
NS2A:
G
200
E
NS2B
NS2B:
P
57
A
NS2B:
I
109
V
NS3
NS3:
T
112
M
NS3:
T
115
I
NS3:
R
255
K
NS3:
E
350
D
NS3:
A
452
V
NS3:
Q
568
E
NS4A
NS4A:
D
36
H
NS4A:
A
68
V
NS4A:
I
78
V
NS4A:
I
89
V
NS4A:
E
99
D
NS4A:
V
100
I
NS4B
NS4B:
V
22
A
NS4B:
I
115
V
NS4B:
S
157
P
NS4B:
I
159
V
NS4B:
F
160
Y
NS4B:
L
190
F
NS5
NS5:
T
50
I
NS5:
V
72
I
NS5:
H
246
Y
NS5:
K
281
R
NS5:
N
288
S
NS5:
M
336
T
NS5:
R
364
K
NS5:
P
365
T
NS5:
A
372
V
NS5:
K
422
R
NS5:
I
553
T
NS5:
T
585
K
NS5:
L
603
V
NS5:
V
619
I
NS5:
T
629
S
NS5:
A
631
T
NS5:
L
639
P
NS5:
T
649
S
Show more
prM
prM:
T
5
S
prM:
G
7
D
prM:
H
11
R
prM:
S
15
G
prM:
Q
17
N
prM:
S
28
A
prM:
A
29
S
prM:
V
31
I
prM:
L
44
M
prM:
E
46
D
prM:
M
49
V
prM:
R
55
L
prM:
T
59
V
prM:
D
62
E
prM:
V
64
I
prM:
A
70
L
prM:
E
72
S
prM:
S
81
N
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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