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PPD_00CVADV.1
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Download FASTA
Download metadata TSV
DENV-2/USA/PPD_00CVADV.1/2025-02-19
J. M. Garrigues,
E. B. Fox &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Sample details
Collection date
2025-02-19
Sampling location
USA (California)
Isolate name
hDenV2/USA/CA-LACPHL-DA00065/2025
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-12 11:21
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession
PX726965.1
NCBI release date
2025-12-24
NCBI update date
2025-12-24
Host
Host
9606
Host name - scientific
Homo sapiens
Submission details
Submission ID
PX726965.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-12 11:19:33 UTC
Date released
2026-03-12 12:04:00 UTC
Earliest release date
2025-12-24
Lineage & Serotype
Lineage
2II_F.1.1
Serotype
DENV-2
Alignment and QC
Length
10430 (87.5%)
# of SNPs
719
# of ambiguous bases
2
# of unknown bases
1050
Nucleotide mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
A
122
G
C
126
T
G
168
A
A
177
G
G
210
A
T
226
C
A
228
G
G
252
A
A
276
G
G
294
A
G
297
A
T
312
C
A
324
G
T
330
C
T
336
C
G
372
T
T
384
C
T
397
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
C
C:
K
9
R
C:
S
101
T
C:
M
104
I
C:
L
108
M
E
E:
M
6
I
E:
Q
52
H
E:
E
71
A
E:
R
120
T
E:
V
129
I
E:
H
149
N
E:
I
164
V
E:
I
322
V
E:
N
390
S
E:
I
462
V
E:
T
478
S
E:
I
484
V
NS1
NS1:
S
80
T
NS1:
T
117
A
NS1:
S
128
L
NS1:
Q
131
H
NS1:
F
178
S
NS1:
N
222
S
NS1:
L
247
F
NS1:
I
264
T
NS1:
T
265
A
NS1:
K
272
R
NS1:
D
281
E
NS2A
NS2A:
V
5
I
NS2A:
A
88
V
NS2A:
M
136
I
NS2A:
I
171
A
NS2B
NS2B:
L
21
F
NS2B:
V
59
I
NS2B:
K
60
R
NS2B:
D
63
E
NS3
NS3:
M
13
V
NS3:
K
15
R
NS3:
A
160
T
NS3:
R
186
K
NS3:
V
273
I
NS3:
I
333
M
NS3:
V
395
I
NS4A
NS4A:
D
23
N
NS4A:
V
64
I
NS4A:
R
76
K
NS4A:
I
89
V
NS4B
NS4B:
L
13
F
NS4B:
I
18
V
NS4B:
A
19
T
NS4B:
V
48
I
NS4B:
F
112
L
NS5
NS5:
M
70
L
NS5:
R
98
K
NS5:
V
130
I
NS5:
I
135
T
NS5:
Y
201
H
NS5:
Y
247
H
NS5:
I
271
T
NS5:
V
335
I
NS5:
R
430
G
NS5:
K
570
R
NS5:
G
605
V
NS5:
I
637
A
NS5:
Q
644
K
NS5:
N
645
D
NS5:
A
648
V
NS5:
S
676
N
NS5:
I
687
V
NS5:
K
800
T
NS5:
A
865
T
NS5:
S
872
T
prM
prM:
G
7
N
prM:
K
16
R
prM:
R
19
K
prM:
S
28
E
prM:
A
29
N
prM:
I
37
M
prM:
M
49
I
prM:
K
52
N
prM:
R
55
L
prM:
I
56
L
prM:
T
57
R
prM:
E
58
Q
prM:
T
59
N
prM:
D
62
E
prM:
V
64
I
prM:
A
70
S
prM:
E
72
S
prM:
S
81
T
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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