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PPD_00CVA85.1
Download
Download FASTA
Download metadata TSV
DENV-1/USA/PPD_00CVA85.1/2025-01-10
J. M. Garrigues,
E. B. Fox &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Sample details
Collection date
2025-01-10
Sampling location
USA (California)
Isolate name
hDenV1/USA/CA-LACPHL-DA00060/2025
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-12 11:21
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession
PX726960.1
NCBI release date
2025-12-24
NCBI update date
2025-12-24
Host
Host
9606
Host name - scientific
Homo sapiens
Submission details
Submission ID
PX726960.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-12 11:19:33 UTC
Date released
2026-03-12 12:04:00 UTC
Earliest release date
2025-12-24
Lineage & Serotype
Lineage
1V_E.1
Serotype
DENV-1
Alignment and QC
Length
10554 (98.3%)
# of SNPs
871
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
T
171
G
T
241
C
T
244
C
C
253
T
T
274
C
G
302
A
G
349
A
A
355
G
C
358
A
A
363
G
T
397
C
C
439
T
C
443
T
C
451
A
G
466
A
C
481
T
A
499
G
T
505
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
C
C:
V
26
G
C:
G
70
S
C:
N
90
S
E
E:
D
37
N
E:
T
88
A
E:
I
114
L
E:
T
161
I
E:
K
203
E
E:
I
293
T
E:
S
339
T
E:
A
369
T
E:
K
394
R
E:
I
436
V
E:
I
439
V
E:
I
480
V
NS1
NS1:
V
93
A
NS1:
S
94
N
NS1:
V
128
I
NS1:
N
139
D
NS1:
N
146
G
NS1:
I
162
V
NS1:
V
178
M
NS1:
I
224
T
NS1:
K
227
R
NS1:
Y
247
F
NS1:
T
307
I
NS1:
K
324
R
NS1:
K
347
R
NS2A
NS2A:
L
12
I
NS2A:
I
15
V
NS2A:
S
28
N
NS2A:
T
44
I
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
106
I
NS2A:
D
139
E
NS2A:
S
142
P
NS2A:
A
147
T
NS2A:
F
159
L
NS2A:
H
162
D
NS2A:
M
168
T
NS2A:
I
171
V
NS2A:
L
199
F
NS2B
NS2B:
V
11
I
NS2B:
E
63
Q
NS2B:
I
106
V
NS3
NS3:
E
43
D
NS3:
A
91
T
NS3:
A
112
T
NS3:
R
185
K
NS3:
V
221
I
NS3:
K
255
R
NS3:
V
384
I
NS3:
I
474
V
NS4A
NS4A:
Q
19
L
NS4A:
R
76
K
NS4A:
I
89
T
NS4B
NS4B:
H
17
Y
NS4B:
H
24
Q
NS4B:
A
27
T
NS4B:
I
48
V
NS5
NS5:
I
34
M
NS5:
Y
127
H
NS5:
T
135
M
NS5:
Q
195
R
NS5:
K
311
R
NS5:
K
364
R
NS5:
A
370
T
NS5:
R
378
K
NS5:
A
616
V
NS5:
S
629
L
NS5:
V
642
A
NS5:
K
647
E
NS5:
H
649
Y
NS5:
T
651
A
NS5:
V
686
I
NS5:
V
784
I
NS5:
T
789
A
NS5:
F
881
Y
prM
prM:
T
59
A
prM:
E
72
D
prM:
D
89
E
prM:
K
122
R
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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