This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00CU0KU.1

DENV-1/Indonesia/PPD_00CU0KU.1/2025-01-06
D. Lokida, H. Kosasih & G. Salim

RSUD Kabupaten Tangerang, Laboratorium Infeksi

Sample details

Collection date
2025-01-06
Sampling location
Indonesia (Banten,Tangerang)
Isolate name
DENV1/INA/2024/TNG6121034

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-12 11:21insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2025-05-26
NCBI update date
2025-05-26

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
PV662994.1
Submitting group
Date submitted
2026-03-12 11:19:33 UTC
Date released
2026-03-12 12:00:57 UTC
Earliest release date
2025-05-26

Lineage & Serotype

Lineage
1I_K.2
Serotype
DENV-1

Alignment and QC

Length
1485 (13.8%)
# of SNPs
118
# of ambiguous bases
1

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • G940A
  • A957G
  • A961G
  • T988A
  • G991T
  • G997A
  • A1006G
  • C1007T
  • G1009A
  • G1012A
  • C1055T
  • G1081A
  • T1147C
  • G1150A
  • G1177A
  • G1192A
  • A1196G
  • C1222T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

E

  • E:N8S
  • E:T88A
  • E:T155S
  • E:S171T
  • E:K203E
  • E:I293T
  • E:V324I
  • E:S339T
  • E:I357T
  • E:V380I
  • E:I436V
  • E:I461V
  • E:M484L
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue