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PPD_00BFSUC.1

YFV/unknown/PX648516.1/2023-11-04
C. A. Hansen, S. Rast, J. K. Thompson, H. Hao, D. Jupiter, S. Higgs, N. Bourne & A. D. T. Barrett

University of Texas Medical Branch, Pathology

Sample details

Collection date
2023-11-04

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-12 10:57insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
Clade V

INSDC

INSDC accession
NCBI release date
2026-01-05
NCBI update date
2026-01-05

Submission details

Submission ID
PX648516.1
Submitting group
Date submitted
2026-03-12 10:57:28 UTC
Date released
2026-03-12 11:27:19 UTC
Earliest release date
2026-01-05

Alignment and QC

Length
10851 (99.9%)
# of SNPs
70

Nucleotide mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

  • A304G
  • C370T
  • T854C
  • G883A
  • A1127G
  • T1140C
  • T1482C
  • T1491C
  • T1750C
  • A1870G
  • T1887C
  • T1946C
  • G1965A
  • C2092T
  • G2112C
  • T2193C
  • A2219G
  • T2257C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

2K

  • 2K:A20V

E

  • E:R52G
  • E:V56A
  • E:V170A
  • E:I173T
  • E:I299M
  • E:F305S
  • E:S325P
  • E:R331K
  • E:R380T
  • E:V407A
  • E:T416A

M

  • M:F36L

NS1

  • NS1:F79L
  • NS1:V307I

NS2a

  • NS2a:V118M
  • NS2a:A167T
  • NS2a:F169L
  • NS2a:A172T
  • NS2a:F183S

NS2b

  • NS2b:L37I
  • NS2b:L109I

NS3

  • NS3:V195I
  • NS3:V280I
  • NS3:S454P
  • NS3:N485D

NS4a

  • NS4a:V107I

NS4b

  • NS4b:M95I
  • NS4b:E145K
  • NS4b:H232Y

RdRPol

  • RdRPol:R22Q
  • RdRPol:D657N
  • RdRPol:K836E
  • RdRPol:L901P

prM

  • prM:F125L
Deletions
N/A
Insertions
N/A

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