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PPD_00BFSPN.1
Download
Download FASTA
Download metadata TSV
YFV/Senegal/PM435329/2024-10
A. Gaye,
M. H. D. Ndione,
E. H. Ndiaye,
M. Dieng,
M. Gaye,
S. F. M. Doukanda,
S. Sankhe,
G. Fall,
S. C. Weaver,
M. M. Diagne &
M. Diallo
Institut Pasteur de Dakar, Virology
Sample details
Collection date
2024-10
Sampling location
Senegal
Isolate name
PM435329
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-12 10:57
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
Clade V
INSDC
INSDC accession
PX379993.1
NCBI release date
2025-12-22
NCBI update date
2025-12-22
Host
Host
7157
Host name - scientific
Culicidae
Submission details
Submission ID
PX379993.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-12 10:57:28 UTC
Date released
2026-03-12 11:27:19 UTC
Earliest release date
2025-12-22
Alignment and QC
Length
10571 (97.3%)
# of SNPs
462
# of deleted bases
6
# of ambiguous bases
9
Nucleotide mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
A
133
G
C
262
T
T
284
C
A
304
G
A
313
G
G
318
A
T
320
C
C
359
T
T
430
C
T
432
C
T
455
C
C
464
A
G
466
A
A
473
G
T
488
C
T
553
C
A
574
C
T
583
C
Show more
Deletions
10363-10365, 10369-10371
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
2K
2K:
A
20
V
C
C:
R
67
K
E
E:
R
52
G
E:
V
56
A
E:
V
170
A
E:
I
173
T
E:
T
200
K
E:
I
299
M
E:
F
305
S
E:
S
325
P
E:
R
331
K
E:
R
380
T
E:
V
407
A
E:
T
416
A
E:
N
450
S
M
M:
F
36
L
NS1
NS1:
F
79
L
NS1:
V
236
I
NS1:
K
276
R
NS1:
V
307
I
NS2a
NS2a:
I
88
V
NS2a:
V
118
M
NS2a:
A
167
T
NS2a:
F
169
L
NS2a:
A
172
T
NS2a:
I
220
L
NS2b
NS2b:
L
37
I
NS2b:
K
54
R
NS2b:
S
79
N
NS2b:
L
109
I
NS2b:
R
126
K
NS3
NS3:
A
80
S
NS3:
V
143
I
NS3:
V
195
I
NS3:
V
280
I
NS3:
N
485
D
NS3:
S
613
A
NS3:
E
614
D
NS4a
NS4a:
I
58
V
NS4a:
V
107
I
NS4b
NS4b:
N
18
D
NS4b:
L
19
S
NS4b:
M
95
I
NS4b:
M
117
T
NS4b:
E
145
K
NS4b:
H
232
Y
RdRPol
RdRPol:
S
2
R
RdRPol:
R
22
Q
RdRPol:
I
78
T
RdRPol:
V
162
M
RdRPol:
K
275
R
RdRPol:
S
292
T
RdRPol:
N
391
K
RdRPol:
A
524
S
RdRPol:
K
564
N
RdRPol:
V
643
A
RdRPol:
T
645
A
RdRPol:
T
809
A
RdRPol:
E
815
G
RdRPol:
M
833
V
RdRPol:
K
836
E
RdRPol:
L
901
P
prM
prM:
F
125
L
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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