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PPD_00BFQ7P.1

YFV/Senegal/PPD_00BFQ7P.1/2022
J. Zhang, E. Chavez, A. E. Lin, D. Wang, M. Winkler, T. Tamura, S. Carver, A. Biswas, B. Adamson, R. Kleiner, B. Burwitz, N. Crossland, F. Douam & A. Ploss

Princeton University, Department of Molecular Biology

Sample details

Collection date
2022
Sampling location
Senegal
Isolate name
Dakar Ben Burwitz

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-12 10:57insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
Clade V

INSDC

INSDC accession
NCBI release date
2025-08-01
NCBI update date
2025-08-01

Host

Host
Host name - scientific
Macaca mulatta

Submission details

Submission ID
PQ186347.1
Submitting group
Date submitted
2026-03-12 10:57:28 UTC
Date released
2026-03-12 11:27:19 UTC
Earliest release date
2025-08-01

Alignment and QC

Length
10867 (100%)
# of SNPs
396
# of inserted bases
5

Nucleotide mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

  • T178C
  • C262T
  • T271C
  • T284C
  • A304G
  • A367G
  • C370T
  • T455C
  • G466A
  • A473G
  • A574T
  • T583C
  • A597T
  • C610T
  • C631T
  • T640C
  • T709C
  • T854C
Deletions
N/A
Insertions

ins_10862:ACGTA

Amino acid mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

2K

  • 2K:S1T
  • 2K:A20V

E

  • E:R52G
  • E:V56A
  • E:I135V
  • E:V170A
  • E:I173T
  • E:T200K
  • E:I299M
  • E:F305S
  • E:S325P
  • E:R331K
  • E:R380T
  • E:V407A
  • E:T416A
  • E:N450S

M

  • M:F36L
  • M:A43S

NS1

  • NS1:F79L
  • NS1:K276R
  • NS1:V307I

NS2a

  • NS2a:L106M
  • NS2a:V118M
  • NS2a:A167T
  • NS2a:F169L
  • NS2a:A172T
  • NS2a:F183S
  • NS2a:I220L

NS2b

  • NS2b:L37I
  • NS2b:L53I
  • NS2b:L109I
  • NS2b:R126K

NS3

  • NS3:V195I
  • NS3:V280I
  • NS3:N485D
  • NS3:S613A
  • NS3:E614D

NS4a

  • NS4a:V107I

NS4b

  • NS4b:I20T
  • NS4b:M95I
  • NS4b:M117T
  • NS4b:E145K
  • NS4b:C187Y
  • NS4b:H232Y

RdRPol

  • RdRPol:S2R
  • RdRPol:R22Q
  • RdRPol:I78T
  • RdRPol:V155A
  • RdRPol:V162M
  • RdRPol:K275R
  • RdRPol:S292T
  • RdRPol:V643T
  • RdRPol:T789P
  • RdRPol:E815G
  • RdRPol:M833V
  • RdRPol:K836E
  • RdRPol:L901P

prM

  • prM:Y39F
  • prM:F125L
  • prM:A132S
Deletions
N/A
Insertions
N/A

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