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PPD_00BFL6V.1
Download
Download FASTA
Download metadata TSV
YFV/Brazil/PNH_6392/2023-02-24
C. T. Sacchi,
K. R. Campos,
M. B. N. Santos &
J. da Silva Nogueira
Instituto Adolfo Lutz, Strategic Laboratory
Sample details
Collection date
2023-02-24
Sampling location
Brazil (Sao Paulo, Aguas da Prata)
Isolate name
PNH_6392
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-12 10:57
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
Clade VI
INSDC
INSDC accession
OQ675592.1
NCBI release date
2023-07-19
NCBI update date
2023-07-19
Host
Host
867334
Host name - scientific
Callicebus nigrifrons
Submission details
Submission ID
OQ675592.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-12 10:57:28 UTC
Date released
2026-03-12 11:17:02 UTC
Earliest release date
2023-07-19
Alignment and QC
Length
10859 (100%)
# of SNPs
1598
# of inserted bases
82
# of deleted bases
85
Nucleotide mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
A
80
G
C
108
T
C
118
A
T
178
C
A
192
G
A
225
G
C
226
T
T
247
C
A
260
G
C
262
T
C
280
T
A
281
G
T
283
C
A
295
G
C
301
T
A
304
T
C
307
T
C
310
T
Show more
Deletions
10365, 10366, 10379-10445, 10524, 10623, 10750-10755, 10770, 10771, 10814-10819
Insertions
ins_10662:T, ins_10780:G, ins_10784:GTCA, ins_10789:AAGC, ins_10792:GAGGCAGTGCAGGCTGGGACAGCCGC, ins_10798:TGTTGC, ins_10800:AAAACCT, ins_10810:ACTTCC, ins_10823:G, ins_10833:AATG, ins_10839:CCGCTACCACCTCCCCACGTGG
Amino acid mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
2K
2K:
S
1
T
2K:
V
18
I
2K:
A
20
V
C
C:
N
25
S
C:
N
36
S
C:
I
48
V
C:
I
55
V
C:
R
67
K
C:
K
70
R
C:
A
79
V
E
E:
R
52
G
E:
V
56
A
E:
N
62
S
E:
H
67
N
E:
A
83
E
E:
V
170
A
E:
I
173
T
E:
K
177
R
E:
G
191
S
E:
T
200
K
E:
R
207
K
E:
R
243
K
E:
D
270
N
E:
N
271
S
E:
N
272
K
E:
S
282
A
E:
I
299
M
E:
F
305
S
Show more
M
M:
F
36
L
M:
V
44
A
M:
T
48
A
NS1
NS1:
I
21
V
NS1:
N
30
D
NS1:
F
79
L
NS1:
P
93
S
NS1:
V
96
I
NS1:
I
177
M
NS1:
A
218
T
NS1:
E
240
D
NS1:
I
286
V
NS1:
I
287
V
NS1:
N
290
S
NS1:
V
307
I
NS1:
R
338
K
NS1:
E
342
D
NS2a
NS2a:
V
6
I
NS2a:
M
30
I
NS2a:
V
35
M
NS2a:
L
48
I
NS2a:
V
118
M
NS2a:
T
147
V
NS2a:
A
167
T
NS2a:
F
169
L
NS2a:
A
172
T
NS2a:
F
183
S
NS2a:
L
216
M
NS2b
NS2b:
I
32
V
NS2b:
L
37
I
NS2b:
K
54
R
NS2b:
A
77
T
NS2b:
L
109
I
NS2b:
R
126
K
NS3
NS3:
H
19
Y
NS3:
I
68
V
NS3:
V
103
A
NS3:
V
195
I
NS3:
R
259
K
NS3:
R
397
K
NS3:
K
444
R
NS3:
N
485
D
NS3:
V
515
I
NS3:
K
535
R
NS3:
S
613
A
NS3:
E
614
D
NS4a
NS4a:
V
5
M
NS4a:
M
24
V
NS4a:
F
30
L
NS4a:
I
53
T
NS4a:
I
58
V
NS4a:
V
107
I
NS4a:
I
119
V
NS4b
NS4b:
S
25
A
NS4b:
P
26
L
NS4b:
L
32
F
NS4b:
M
95
I
NS4b:
S
121
T
NS4b:
E
145
K
NS4b:
H
232
Y
RdRPol
RdRPol:
S
2
R
RdRPol:
R
22
Q
RdRPol:
I
78
T
RdRPol:
K
95
R
RdRPol:
R
107
K
RdRPol:
D
108
E
RdRPol:
I
132
V
RdRPol:
V
138
I
RdRPol:
S
152
P
RdRPol:
V
162
M
RdRPol:
A
173
S
RdRPol:
D
177
E
RdRPol:
N
178
S
RdRPol:
V
229
I
RdRPol:
K
275
R
RdRPol:
E
276
A
RdRPol:
M
290
T
RdRPol:
T
291
A
Show more
prM
prM:
K
6
R
prM:
F
125
L
prM:
V
133
A
prM:
T
137
A
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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