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PPD_00BFK5Y.1

YFV/Brazil/PR177-2021/2021-06-01
M. Giovanetti, V. Fonseca, J. Lourenco, J. Xavier, T. Adelino, C. Oliveira, H. Fritsch, N. Guimaraes, C. Zanluca, A. C. Ribeiro, L. C. J. Alcantara & C. D. Nunes

Pan-American Health Organization (PAHO), PAHO Health Emergency (PHE)

Sample details

Collection date
2021-06-01
Sampling location
Brazil (Linha Nova, Rio Grande do Sul)
Isolate name
PR177-2021

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-12 10:57insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
Clade VI

INSDC

INSDC accession
NCBI release date
2023-02-12
NCBI update date
2023-02-12

Host

Host
Host name - scientific
Alouatta sp.

Submission details

Submission ID
OP508686.1
Submitting group
Date submitted
2026-03-12 10:57:28 UTC
Date released
2026-03-12 11:17:02 UTC
Earliest release date
2023-02-12

Alignment and QC

Length
10493 (96%)
# of SNPs
1567
# of unknown bases
70

Nucleotide mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

  • A166T
  • T178C
  • A192G
  • A195G
  • A225G
  • C226T
  • T247C
  • A260G
  • C262T
  • A281G
  • A295G
  • C301T
  • A304T
  • C307T
  • C310T
  • A313G
  • G318A
  • G319A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

2K

  • 2K:S1T
  • 2K:V18I
  • 2K:A20V

C

  • C:N25S
  • C:K26R
  • C:N36S
  • C:I48V
  • C:I55V
  • C:R67K
  • C:K70R
  • C:A79V

E

  • E:R52G
  • E:V56A
  • E:N62S
  • E:H67N
  • E:A83E
  • E:V170A
  • E:I173T
  • E:K177R
  • E:G191S
  • E:T200K
  • E:R207K
  • E:R243K
  • E:D270N
  • E:N271S
  • E:N272K
  • E:S282A
  • E:I299M
  • E:F305S

M

  • M:F36L
  • M:V44A
  • M:T48A

NS1

  • NS1:I21V
  • NS1:F79L
  • NS1:P93S
  • NS1:V96I
  • NS1:I177M
  • NS1:A218T
  • NS1:E240D
  • NS1:I286V
  • NS1:I287V
  • NS1:N290G
  • NS1:V307I
  • NS1:R338K
  • NS1:E342D
  • NS1:S343N

NS2a

  • NS2a:V6I
  • NS2a:M30I
  • NS2a:V35M
  • NS2a:L48I
  • NS2a:V118M
  • NS2a:T147V
  • NS2a:A167T
  • NS2a:F169L
  • NS2a:A172T
  • NS2a:F183S
  • NS2a:L216M

NS2b

  • NS2b:I32V
  • NS2b:L37I
  • NS2b:K54R
  • NS2b:A77T
  • NS2b:L109I
  • NS2b:L115S
  • NS2b:R126K

NS3

  • NS3:H19Y
  • NS3:I68V
  • NS3:E88D
  • NS3:V103A
  • NS3:R121K
  • NS3:N162T
  • NS3:V195I
  • NS3:R259K
  • NS3:R397K
  • NS3:N485D
  • NS3:V515I
  • NS3:K535R
  • NS3:S613A
  • NS3:E614D

NS4a

  • NS4a:V5M
  • NS4a:M24V
  • NS4a:F30L
  • NS4a:I53T
  • NS4a:I58V
  • NS4a:G61R
  • NS4a:V107I
  • NS4a:I119V

NS4b

  • NS4b:S25A
  • NS4b:L32F
  • NS4b:M95I
  • NS4b:S121T
  • NS4b:E145K
  • NS4b:H232Y

RdRPol

  • RdRPol:S2R
  • RdRPol:R22Q
  • RdRPol:I78T
  • RdRPol:K95R
  • RdRPol:K101R
  • RdRPol:R107K
  • RdRPol:D108E
  • RdRPol:I132V
  • RdRPol:V138I
  • RdRPol:S152P
  • RdRPol:V162M
  • RdRPol:A173S
  • RdRPol:D177E
  • RdRPol:N178S
  • RdRPol:V229I
  • RdRPol:K275R
  • RdRPol:E276A
  • RdRPol:M290T

prM

  • prM:K6R
  • prM:F125L
  • prM:V133A
  • prM:T137A
Deletions
N/A
Insertions
N/A

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