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PPD_00BFDL7.1
Download
Download FASTA
Download metadata TSV
YFV/Brazil/23v-121/2023-03
N. C. C. A. Fernandes
Adolfo Lutz Institute, Pathology Center
Sample details
Collection date
2023-03
Sampling location
Brazil
Isolate name
23v-121
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-12 10:57
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
Clade VI
INSDC
INSDC accession
OR237970.1
NCBI release date
2025-01-01
NCBI update date
2025-01-01
Host
Host
867334
Host name - scientific
Callicebus nigrifrons
Submission details
Submission ID
OR237970.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-12 10:57:28 UTC
Date released
2026-03-12 11:17:02 UTC
Earliest release date
2025-01-01
Alignment and QC
Length
9684 (85.8%)
# of SNPs
1566
# of inserted bases
29
# of deleted bases
478
# of ambiguous bases
1
# of unknown bases
810
# of frame shifts
6
Frame shifts
RdRPol:380(nt:8772-8775),RdRPol:413-417(nt:8872-8885),RdRPol:631-634(nt:9527-9538),RdRPol:641-646(nt:9557-9572),RdRPol:793-795(nt:10013-10021),RdRPol:865-905(nt:10229-10351)
Nucleotide mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
A
547
C
T
553
C
G
556
T
A
577
C
T
584
C
A
589
G
G
595
A
C
604
T
C
610
T
A
613
C
T
628
C
G
649
A
A
655
T
T
664
A
T
667
C
C
670
T
G
682
A
C
691
T
Show more
Deletions
8762-8764, 8771, 8886-8890, 9550-9556, 9584-9595, 10022, 10204-10228, 10240-10663
Insertions
ins_8775:CGGA, ins_8871:CGTTT, ins_9505:CAA, ins_9526:TCAAAGGC, ins_9538:CCCTCAT, ins_9572:T, ins_10012:C
Amino acid mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
2K
2K:
S
1
T
2K:
V
18
I
2K:
A
20
V
E
E:
R
52
G
E:
V
56
A
E:
N
62
S
E:
H
67
N
E:
A
83
E
E:
V
170
A
E:
I
173
T
E:
K
177
R
E:
G
191
S
E:
T
200
K
E:
R
207
K
E:
R
243
K
E:
D
270
N
E:
N
271
S
E:
N
272
K
E:
S
282
A
E:
I
299
M
E:
F
305
S
Show more
M
M:
F
36
L
M:
V
44
A
M:
T
48
A
NS1
NS1:
I
21
V
NS1:
I
177
M
NS1:
A
218
T
NS1:
E
240
D
NS1:
I
286
V
NS1:
I
287
V
NS1:
N
290
G
NS1:
V
307
I
NS1:
R
338
K
NS1:
E
342
D
NS2a
NS2a:
V
6
I
NS2a:
V
118
M
NS2b
NS2b:
A
77
T
NS2b:
L
109
I
NS2b:
R
126
K
NS3
NS3:
H
19
Y
NS3:
I
68
V
NS3:
E
88
D
NS3:
V
103
A
NS3:
R
121
K
NS3:
N
162
T
NS3:
V
195
I
NS3:
R
259
K
NS3:
R
397
K
NS3:
N
485
D
NS3:
V
515
I
NS3:
K
535
R
NS3:
S
613
A
NS3:
E
614
D
NS4a
NS4a:
V
5
M
NS4a:
M
24
V
NS4a:
F
30
L
NS4a:
I
53
T
NS4a:
I
58
V
NS4a:
V
107
I
NS4a:
I
119
V
NS4b
NS4b:
S
25
A
NS4b:
L
32
F
NS4b:
M
95
I
NS4b:
S
121
T
NS4b:
E
145
K
NS4b:
H
232
Y
RdRPol
RdRPol:
S
2
R
RdRPol:
R
22
Q
RdRPol:
I
78
T
RdRPol:
K
95
R
RdRPol:
K
101
R
RdRPol:
R
107
K
RdRPol:
D
108
E
RdRPol:
I
132
V
RdRPol:
V
138
I
RdRPol:
S
152
P
RdRPol:
V
162
M
RdRPol:
A
173
S
RdRPol:
D
177
E
RdRPol:
N
178
S
RdRPol:
V
229
I
RdRPol:
K
275
R
RdRPol:
E
276
A
RdRPol:
K
313
R
Show more
prM
prM:
F
125
L
prM:
V
133
A
prM:
T
137
A
Deletions
RdRPol
RdRPol:379, RdRPol:418, RdRPol:639, RdRPol:640, RdRPol:796, RdRPol:857-864
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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