This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.
YFV/Brazil/MG66-S/2021-08-25
M. S. Andrade, F. S. Campos, C. H. Oliveira, R. S. Oliveira, A. Campos, M. Almeida, D. Simonini-Teixeira, A. Seva, A. O. Temponi, F. M. Magalhaes, D. C. C. Chaves, M. A. Pereira, L. O. Lamounier, G. G. Menezes, S. M. A. Teixeira, M. E. G. Santos, S. Bernal-Valle, N. Muller, J. C. Cardoso, E. Santos, M. Mares-Guia, G. R. Albuquerque, A. P. M. Romano, A. C. Franco, B. M. Ribeiro, P. M. Roehe & F. V. S. Abreu

University of Brasilia, Cell Biology

Sample details

Collection date
2021-08-25
Sampling location
Brazil
Isolate name
MG66-S

Data use terms

Data use terms
OPEN

Clade

Clade
Clade VI

INSDC

INSDC accession
NCBI release date
2022-11-06
NCBI update date
2022-11-06

Host

Host
Host name - scientific
Alouatta caraya

Submission details

Submission ID
OL519588.1
Date submitted
2026-03-12 10:57:28 UTC
Date released
2026-03-12 11:17:02 UTC
Earliest release date
2022-11-06

Alignment and QC

Length
10172 (93.6%)
# of SNPs
1528

Nucleotide mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

  • T178C
  • A192G
  • A225G
  • C226T
  • T247C
  • A260G
  • C262T
  • A281G
  • T283C
  • A295G
  • C301T
  • A304T
  • C307T
  • C310T
  • A313G
  • G318A
  • G319A
  • T320C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

2K

  • 2K:S1T
  • 2K:V18I
  • 2K:A20V

C

  • C:N25S
  • C:N36S
  • C:I48V
  • C:I55V
  • C:R67K
  • C:K70R
  • C:A79V

E

  • E:R52G
  • E:V56A
  • E:N62S
  • E:H67N
  • E:A83E
  • E:V170A
  • E:I173T
  • E:K177R
  • E:G191S
  • E:T200K
  • E:R207K
  • E:R243K
  • E:D270N
  • E:N271S
  • E:N272K
  • E:S282A
  • E:I299M
  • E:F305S

M

  • M:F36L
  • M:V44A
  • M:T48A

NS1

  • NS1:I21V
  • NS1:N30D
  • NS1:F79L
  • NS1:P93S
  • NS1:V96I
  • NS1:I177M
  • NS1:A218T
  • NS1:E240D
  • NS1:I286V
  • NS1:I287V
  • NS1:N290G
  • NS1:V307I
  • NS1:R338K
  • NS1:E342D

NS2a

  • NS2a:V6I
  • NS2a:M30I
  • NS2a:V35M
  • NS2a:L48I
  • NS2a:V118M
  • NS2a:T147V
  • NS2a:A167T
  • NS2a:F169L
  • NS2a:A172T
  • NS2a:F183S
  • NS2a:L216M

NS2b

  • NS2b:I32V
  • NS2b:L37I
  • NS2b:K54R
  • NS2b:A77T
  • NS2b:L109I
  • NS2b:R126K

NS3

  • NS3:H19Y
  • NS3:I68V
  • NS3:V103A
  • NS3:V195I
  • NS3:R259K
  • NS3:R397K
  • NS3:N485D
  • NS3:V515I
  • NS3:K535R
  • NS3:S613A
  • NS3:E614D

NS4a

  • NS4a:V5M
  • NS4a:M24V
  • NS4a:F30L
  • NS4a:I53T
  • NS4a:I58V
  • NS4a:V107I
  • NS4a:I119V

NS4b

  • NS4b:S25A
  • NS4b:L32F
  • NS4b:M95I
  • NS4b:S121T
  • NS4b:E145K
  • NS4b:H232Y

RdRPol

  • RdRPol:S2R
  • RdRPol:R22Q
  • RdRPol:I78T
  • RdRPol:K95R
  • RdRPol:R107K
  • RdRPol:D108E
  • RdRPol:I132V
  • RdRPol:V138I
  • RdRPol:S152P
  • RdRPol:V162M
  • RdRPol:A173S
  • RdRPol:D177E
  • RdRPol:N178S
  • RdRPol:V229I
  • RdRPol:K275R
  • RdRPol:E276A
  • RdRPol:M290T
  • RdRPol:T291A

prM

  • prM:K6R
  • prM:F125L
  • prM:V133A
  • prM:T137A
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue